Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,534,786 – 13,534,878 |
Length | 92 |
Max. P | 0.690769 |
Location | 13,534,786 – 13,534,878 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 76.66 |
Mean single sequence MFE | -21.93 |
Consensus MFE | -8.90 |
Energy contribution | -9.02 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.17 |
Mean z-score | -2.79 |
Structure conservation index | 0.41 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13534786 92 - 22407834 UACAUAUACAUAUGCGAUAUAUGCGAGUUGCAUUCAUAUGUUAAUAUGUACAUAAAUGGAGGUGUGCAGACUGUGCUUUCUCAUAAUUCCCG ((((((((((((((......((((.....)))).)))))))..))))))).......((((.((((.(((........))))))).)))).. ( -20.20) >DroSec_CAF1 20810 85 - 1 UACAUAUAUG-------UACAUAUGAGUUGCAUUCAUAUGUUAAUAUGUACAUAAAUGGAGGUGUGCAGACUGUGCUUUCUCAUAAUUCCCG ..(((.((((-------(((((((.....((((....))))..))))))))))).)))((((.(..(.....)..)..)))).......... ( -23.50) >DroEre_CAF1 20989 72 - 1 --------UA-------UACAUAUGAGUUGCAUUCAUAUGUUAAUACG-----AUAUGAAGGUGUGCAGGACCUGCUUUCUCAUAAUUCCGG --------..-------....((((((..((((((((((((....)).-----)))))))(((.......))))))...))))))....... ( -16.70) >DroYak_CAF1 21502 81 - 1 UACUCGUAUG-------UACAUACGAGUUGCAUUCAUAUGCUAAUAUGU----AUAUGAAUGUGUGCAGUCCCUGCUUUCUCAUAAUUCCCG .((((((((.-------...)))))))).((((((((((((......))----))))))))))..((((...))))................ ( -27.30) >consensus UACAUAUAUA_______UACAUACGAGUUGCAUUCAUAUGUUAAUAUGU____AAAUGAAGGUGUGCAGACCCUGCUUUCUCAUAAUUCCCG ..................((((((((((...))))))))))..............((((..(...(((.....))).)..))))........ ( -8.90 = -9.02 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:29 2006