Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,534,188 – 13,534,281 |
Length | 93 |
Max. P | 0.602264 |
Location | 13,534,188 – 13,534,281 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.93 |
Mean single sequence MFE | -24.35 |
Consensus MFE | -21.81 |
Energy contribution | -22.17 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.38 |
Structure conservation index | 0.90 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13534188 93 + 22407834 UUCAGCGAA---------------------------AAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC ((((((((.---------------------------..(...((((((((..((((((((...))).)))))(((......)))..))))))))..)..))))))))(((......))). ( -26.70) >DroPse_CAF1 26797 93 + 1 UGCAACGAA---------------------------CAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC .((......---------------------------......((((((((..((((((((...))).)))))(((......)))..))))))))...((((((......))..)))))). ( -23.90) >DroWil_CAF1 22808 117 + 1 UGCAACGAACAAAAACAACAGAAAAAAAAAUGGAAGAAAAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGCGUAAUCAAAACGCUCGCUGAAGUGCCAG---GCC ..............................(((.........((((((((..((((((((...))).)))))(((........)))))))))))..((((......))))))).---... ( -23.60) >DroYak_CAF1 20923 93 + 1 UUCAGCGCA---------------------------AAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC ((((((((.---------------------------..(...((((((((..((((((((...))).)))))(((......)))..))))))))..).).)))))))(((......))). ( -24.40) >DroAna_CAF1 22628 93 + 1 UUCAACGAA---------------------------AAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC .........---------------------------......((((((((..((((((((...))).)))))(((......)))..))))))))..(((((((......))..))))).. ( -23.60) >DroPer_CAF1 26747 93 + 1 UGCAACGAA---------------------------CAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC .((......---------------------------......((((((((..((((((((...))).)))))(((......)))..))))))))...((((((......))..)))))). ( -23.90) >consensus UGCAACGAA___________________________AAGAACUUGAUUACACGUGCGCUAAUUUAGUUGCACGCGAAAACAUGCGAGUAAUCAAAACGGUUGCUGAAGUGCCAGACCGCC ..........................................((((((((..((((((((...))).)))))(((......)))..))))))))..(((((((......))..))))).. (-21.81 = -22.17 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:25 2006