Locus 4714

Sequence ID 2L_DroMel_CAF1
Location 13,533,002 – 13,533,108
Length 106
Max. P 0.569287
window7461

overview

Window 1

Location 13,533,002 – 13,533,108
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 83.90
Mean single sequence MFE -22.54
Consensus MFE -16.44
Energy contribution -16.31
Covariance contribution -0.13
Combinations/Pair 1.62
Mean z-score -1.83
Structure conservation index 0.73
SVM decision value 0.07
SVM RNA-class probability 0.569287
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13533002 106 - 22407834
AUUAAACUGAACAUCAUAUAAUUUCAUUUUCUGUUUGCUGUUCAAUUUCCAAAAAUCCAGAGCGGCAUGCACGGUAAUAUCGUCAACUGUGCGUUUGAAAAUAUGA
.............((((((..(((((..........(((((((................)))))))(((((((((..........))))))))).))))))))))) ( -24.69)
>DroSec_CAF1 19052 106 - 1
AUCAAACUCAACGUCAUAUAAUUUCAUUUUCUGUUUUCUGUUCAACUUCCAAAAAUCCAGGGCGGCAUGCACGGUUAUAUCGUCAACCGUGCGUUUGAAAAUAUGA
.............((((((..(((((...........((((((................)))))).((((((((((........)))))))))).))))))))))) ( -22.79)
>DroSim_CAF1 15768 106 - 1
AUCAAACUCAACGUCAUAUAAUUUCAUUUUCUGUUUGCUGUUUAACUUCCAAAAAUCCAGGGCGGCAUGCACGGUAAUAUCAUCAACCGUGCGUUUGAAAAUAUGA
.............((((((..(((((..........(((((((................)))))))(((((((((..........))))))))).))))))))))) ( -23.79)
>DroEre_CAF1 19316 106 - 1
AUCAAACUCAACAUCAUAUAACUUCAUUUUCUGCUUGCUGUUCAGCUUCCAAAAAUCCAGGGCGGCAUGCACGGUUAUAUCGUCAACGGUGCGUUUGAAAAUAUGA
.((((((............................((((((((................)))))))).((((.(((........))).))))))))))........ ( -22.89)
>DroYak_CAF1 19802 106 - 1
AUCAAACUCAACAUCAUAUAAUUUCAUUUUCUGUUUGCUGUUCAGCUUCCAAAAAUCCAGGACGGCAUGCACGGUUAUAUCAUCAAUCGUGCGUUUGAAAAUAUGA
.............((((((..(((((..........(((((((................)))))))((((((((((........)))))))))).))))))))))) ( -25.39)
>DroAna_CAF1 20685 103 - 1
GUCGAAUUUCACAUCUAAAAUCUUCAAUUUCUGAUU---GUUUAACUUCCAAAAUGCCAACUCGGCGUGUACCCAAAUAUCAUUGACGUCGUAUUUGAAAAUACGC
(((((............((((..(((.....)))..---))))..........(((((.....)))))..............)))))..((((((....)))))). ( -15.70)
>consensus
AUCAAACUCAACAUCAUAUAAUUUCAUUUUCUGUUUGCUGUUCAACUUCCAAAAAUCCAGGGCGGCAUGCACGGUAAUAUCAUCAACCGUGCGUUUGAAAAUAUGA
.((((((............................((((((((................)))))))).(((((((..........)))))))))))))........ (-16.44 = -16.31 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:24 2006