Locus 4713

Sequence ID 2L_DroMel_CAF1
Location 13,532,276 – 13,532,396
Length 120
Max. P 0.644944
window7460

overview

Window 0

Location 13,532,276 – 13,532,396
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -31.78
Consensus MFE -22.03
Energy contribution -25.22
Covariance contribution 3.20
Combinations/Pair 1.16
Mean z-score -1.67
Structure conservation index 0.69
SVM decision value 0.23
SVM RNA-class probability 0.644944
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13532276 120 - 22407834
ACAGUUCAGUGGAAAAUUCGAAACUCGUCGCAGCUCAUCGGCAAUCAACUUAAACAAAAUUUGUGAUUGUAGAGCUGACAGUGCCUGACAAUAGUCAAUUUCCAUUGCAGUGUAGUUGAU
(((.(.(((((((((....(..(((.(((..(((((....(((((((.(.............)))))))).)))))))))))..)((((....)))).))))))))).).)))....... ( -32.92)
>DroPse_CAF1 25751 120 - 1
ACAAUGAAAGGGGAAAUUGGAAGCACGUCGUAGCUCAUCGGCAAUCAUUUUCAGCAAAUAAUUCGAAUAUAUUGAUUCCAAAGCAUCGCAAUAAUUAAUUUCCAAGGUAGUAUAGUUGGA
.((((......(((((((((..((..((((........))))...........((.......((((.....)))).......))...)).....)))))))))...........)))).. ( -16.07)
>DroSec_CAF1 18337 120 - 1
GCAGUGCAGUGGAAAGUUCGAAACUCGUCGCAGCUCAUUGGCAAUAAUCUUAAACAAAAUUUGUGAUUGUAGAGCUGCCAGUGCCUGACAAUAGUCAAGUUCCAUUGCAGUGUAGUUAAU
(((.(((((((((((((((((......))).))))((((((((((((((.((((.....)))).)))))).....))))))))..((((....))))..)))))))))).)))....... ( -38.90)
>DroSim_CAF1 15061 120 - 1
GCAGUGCAGUGGAAAGUUCGAAACUCGUCGCAGCUCAUCGGCAAUAAUCUUAAAUAAAAUUUGUGAUUGUAGAGCUGCCAGUGCCUGACAAUAGUCAAGUUCCAUUGCAGUGUAGUUGAU
(((.((((((((((...............(((((((....(((((.....(((((...)))))..))))).))))))).......((((....))))..)))))))))).)))....... ( -37.10)
>DroEre_CAF1 18591 120 - 1
ACAAUGCAGUGGAAAAUUCGAAACUCGGCGCAGCUCAUCGGCAAUCAUCUUAUACAAAAAUUGUGAUUGUAGAGCUGAUAAUGCAUGACAAUAGUCUGUUUCCAUUGUAGUAUAGUUGAU
....(((((((((((............(((((((((....((((((((..(........)..)))))))).))))))....)))..(((....)))..)))))))))))........... ( -33.00)
>DroYak_CAF1 19079 120 - 1
GCAAUGCAGUGGAAAAUUCGAAACUCGUCGCAGCUCGUCGGCAAUCAUCUUAUACAGAAAUUGUGAGUGUAGAGCUGCUAAUGCCUGACAAUAGUCCAUUUCCGAUGCAGUGUAGUUGAU
(((.((((.((((((..............(((((((....(((.((((..(........)..)))).))).)))))))........(((....)))..)))))).)))).)))....... ( -32.70)
>consensus
ACAAUGCAGUGGAAAAUUCGAAACUCGUCGCAGCUCAUCGGCAAUCAUCUUAAACAAAAAUUGUGAUUGUAGAGCUGCCAAUGCCUGACAAUAGUCAAUUUCCAUUGCAGUGUAGUUGAU
(((.((((((((((...............(((((((....((((((((..............)))))))).)))))))........(((....)))...)))))))))).)))....... (-22.03 = -25.22 +   3.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:23 2006