Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,515,007 – 13,515,119 |
Length | 112 |
Max. P | 0.517806 |
Location | 13,515,007 – 13,515,119 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 87.85 |
Mean single sequence MFE | -22.04 |
Consensus MFE | -16.35 |
Energy contribution | -17.17 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.04 |
Mean z-score | -1.40 |
Structure conservation index | 0.74 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13515007 112 + 22407834 AAUGCCAGAAGGCAUCAAGCCAAAAAACCUAAAAACAGUGUUGCAAACGUUUCAGCAUGUGGCUA-UACACCGCAGACAAUUUCACAAUUGUCUCACUAAAAGGAUGAUAUUC ...(((....)))(((((((((...............((((((.((....)))))))).))))).-......(.((((((((....)))))))))..........)))).... ( -22.29) >DroSec_CAF1 6415 112 + 1 AAUGCCAGAAGGCAUCAAGCCAAAAAACCUAAAAACAGUGUUGCUAACGUUUCAGCAUGUGGCUA-UACACCGCAGACAAUUUUACACGUGUCUCAAUAAAAGAUUAAUAAUC .(((((....)))))..(((((...............(((((((....)...)))))).))))).-......(.(((((..........)))))).................. ( -18.39) >DroEre_CAF1 6310 112 + 1 AAUGCCAGAAGGCAUCAAGCCAAAAAACCUAAAAACAGAGUUGCAAACGUUUCAGCAUGUGGCUG-UACACUGCAAACAAUUUUACAAUUGUCGUGAAGACAGAAUGAUCAUC ..((((....))))(((.......................(((((...((..((((.....))))-.))..)))))............(((((.....)))))..)))..... ( -20.10) >DroYak_CAF1 6622 111 + 1 AAUGCCAGAAGGCAUCAAGCCAAA-AACCUAAAAACAGUGUUGCAAACGUUUCAGCAUGUGGCUGAUACACAGCAGAUAAUUUUACAAUUGUCGUGCUGA-AUAAUGAUAAUC ...(((....)))(((((((((..-............((((((.((....)))))))).)))))......((((((((((((....))))))).))))).-....)))).... ( -27.36) >consensus AAUGCCAGAAGGCAUCAAGCCAAAAAACCUAAAAACAGUGUUGCAAACGUUUCAGCAUGUGGCUA_UACACCGCAGACAAUUUUACAAUUGUCGCAAUAAAAGAAUGAUAAUC .(((((....)))))..(((((...............((((((.........)))))).)))))...........(((((((....))))))).................... (-16.35 = -17.17 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:19 2006