Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,514,719 – 13,514,833 |
Length | 114 |
Max. P | 0.915906 |
Location | 13,514,719 – 13,514,833 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 75.66 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -15.06 |
Energy contribution | -14.40 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.17 |
Mean z-score | -1.96 |
Structure conservation index | 0.61 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915906 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13514719 114 + 22407834 GAUAUUGCAGUUUAUGCAAUGUGUGGUAGCUAAAUACAUAUGUAUGUACAUACAUAGAUCGGUAUUGAUUUUUACUGGGAAUCAAUCCGAAACCCCCACAAACCCCACCACUGU .((((((((.....))))))))(((((...........(((((((....)))))))..((((.(((((((((.....)))))))))))))................)))))... ( -32.90) >DroSec_CAF1 6128 113 + 1 GAUAUUGUAGUUUAAGCAAUCGGCUGUUGCUACCUCCGCACAUACAUACAUACAUAGAUCGGUAUUGAUUUUUACUGGGAAUCAAUCCGAAACCCCCACA-ACUCCACCACUGU ......(((((...(((.....)))...))))).........................((((.(((((((((.....)))))))))))))..........-............. ( -21.20) >DroYak_CAF1 6352 99 + 1 GGAAUUGUAAUUGAAAUAAUGAUAU--------------AGAUACAUAGAUACAUAGAUCGGUAUUGAUUUUCACGGGGAAUCAAUCCGAAACCCCCACA-ACUCCACCACGGU (((.((((...........(((...--------------.(((((...(((......))).))))).....))).((((..((.....))..)))).)))-).)))........ ( -20.40) >consensus GAUAUUGUAGUUUAAGCAAUGAGAUGU_GCUA__U_C__ACAUACAUACAUACAUAGAUCGGUAUUGAUUUUUACUGGGAAUCAAUCCGAAACCCCCACA_ACUCCACCACUGU ...(((((.......)))))......................................((((.(((((((((.....)))))))))))))........................ (-15.06 = -14.40 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:17 2006