| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,373,019 – 1,373,189 |
| Length | 170 |
| Max. P | 0.832144 |
| Location | 1,373,019 – 1,373,136 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 91.88 |
| Mean single sequence MFE | -31.93 |
| Consensus MFE | -27.17 |
| Energy contribution | -27.73 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.832144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1373019 117 + 22407834 AGCCGGGCAGCAAAGUGCAAAAGGCAAACGUUUCGCUCGGCGAGUCCUGCCGGACAAUAGUGCACAAAUUAACUUACAAAAGCUAAAUAAAAACUGCCAACGCGGCAGUCAACGUGU .((((((((((....(((.....)))...)))..)))))))..((((....))))......((((...(((.(((....))).)))......((((((.....))))))....)))) ( -34.80) >DroSec_CAF1 4701 117 + 1 AGCCGGGCAGCAAAGUGCAAAAGGCAAACGUUUCGCUCGGCGGGUCCUGCCGGACAAUAGUGCACAAAUUAACUUACAAAAGCUAAAUAAAAACUGCCAACGCGGCAGUCAACGUGU .((((((((((....(((.....)))...)))..)))))))..((((....))))......((((...(((.(((....))).)))......((((((.....))))))....)))) ( -34.60) >DroSim_CAF1 4673 117 + 1 AGCCGGGCAGCAAAGUGCAAAAGGCAAACGUUUCGCUCGGCGGGUCCUGCCGGACAAUAGUGCACAAAUUAACUUACAAAAGCUAAAUAAAAACUGCCAACGCGGCAGUCAACGUGU .((((((((((....(((.....)))...)))..)))))))..((((....))))......((((...(((.(((....))).)))......((((((.....))))))....)))) ( -34.60) >DroAna_CAF1 5679 109 + 1 A--CGAGGAGGAAAGUGCAAAAGGCAAACGUUUCAUUUGGCGGGUCCUGCAGGACAAUAGUGCACAAAUUAACUUACAAAAGCUAAAUAAAAAUUGCCAACGCGGCAGG------GC .--....((((....(((.....)))....))))(((((((..((((....))))..((((......))))..........))))))).....(((((.....))))).------.. ( -23.70) >consensus AGCCGGGCAGCAAAGUGCAAAAGGCAAACGUUUCGCUCGGCGGGUCCUGCCGGACAAUAGUGCACAAAUUAACUUACAAAAGCUAAAUAAAAACUGCCAACGCGGCAGUCAACGUGU .(((((((.......(((.....)))........)))))))..((((....))))......((((...(((.(((....))).)))......((((((.....))))))....)))) (-27.17 = -27.73 + 0.56)
| Location | 1,373,096 – 1,373,189 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 95.64 |
| Mean single sequence MFE | -22.13 |
| Consensus MFE | -21.42 |
| Energy contribution | -21.20 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.811000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1373096 93 + 22407834 AAAAGCUAAAUAAAAACUGCCAACGCGGCAGUCAACGUGUCGUGUGAAUGGGCGGCUAUAUACUACAUAUAUAUACUGUAUAGUCCAUCCAGA ..................(((.(((((((((....).)))))))).....)))(((((((((.((........)).)))))))))........ ( -22.50) >DroSec_CAF1 4778 89 + 1 AAAAGCUAAAUAAAAACUGCCAACGCGGCAGUCAACGUGUCGUGUGAAUGGGCGGCUAUAUACU----AUAUAUACUGUACAGCCCAUCCAGA ................(((...(((((((((....).))))))))..((((((.((..((((..----...))))..))...)))))).))). ( -23.30) >DroSim_CAF1 4750 89 + 1 AAAAGCUAAAUAAAAACUGCCAACGCGGCAGUCAACGUGUCGUGUGAAUGGGCGGCUAUAUACU----AUAUAUACUGUACAGUCCAUCCAGA ................(((...(((((((((....).))))))))..((((((.((..((((..----...))))..))...)))))).))). ( -20.60) >consensus AAAAGCUAAAUAAAAACUGCCAACGCGGCAGUCAACGUGUCGUGUGAAUGGGCGGCUAUAUACU____AUAUAUACUGUACAGUCCAUCCAGA ................(((...(((((((((....).))))))))..((((((.((((((((.......))))))..))...)))))).))). (-21.42 = -21.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:58 2006