Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,508,164 – 13,508,284 |
Length | 120 |
Max. P | 0.643767 |
Location | 13,508,164 – 13,508,284 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.72 |
Mean single sequence MFE | -31.18 |
Consensus MFE | -25.91 |
Energy contribution | -25.00 |
Covariance contribution | -0.91 |
Combinations/Pair | 1.38 |
Mean z-score | -1.87 |
Structure conservation index | 0.83 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643767 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13508164 120 - 22407834 UCAAACAAGUUGUCAUUCCAUUGAGGGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCACCGAUUGAUGCGCCGAUUGGCAGUAGCUAAGGGCAUAACCGAAUGAUUAAA ...........(((((((........(((((((((((((........))))))))))))).(((.(((..((((((......))))))((....))...))))))....))))))).... ( -31.10) >DroSec_CAF1 106916 120 - 1 UCAAACAAGUUGUCAUUCCAUUGAGGGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCACCGAUUGAUGCGCCGAUUGGCAGUAGCUAAGGUCAUAACCGAAUGAUUAAA ...........(((((((........(((((((((((((........))))))))))))).((((((...((((((......))))))((....))...))))))....))))))).... ( -31.90) >DroSim_CAF1 108463 119 - 1 UCAAACAAGUUGUCAUUCCAUUGAGGGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCACCGAUUGAUGCGCCGAUUGGCAGUAGCUAAGGGCAUAACCGAAUGAU-AAA .........(((((((((........(((((((((((((........))))))))))))).(((.(((..((((((......))))))((....))...))))))....)))))))-)). ( -33.70) >DroEre_CAF1 111383 120 - 1 UCACACAAGUUGUCAUUUCAUUGAGCGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCUCCGAUUGAUGCGCCGAUUGGCAGUAGCUAAAGGCAUAACCGAAUGAUUAAA ...........(((((((.....((((((((((((((((........))))))))))))).......(((((((((......))))))).))..)))...((.....))))))))).... ( -28.80) >DroYak_CAF1 109333 120 - 1 UCAAACAAGUUGUCAUUCCAUUGAGGGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCACCGAUUGAUGCGCCGAUUAGCAGUAGCUAGGGGCAUAACCGAAUGAUUAAA ...........(((((((((((((....(((((((((((........)))))))))))))))))............((((.((...((((....)))))).))))....))))))).... ( -30.80) >DroAna_CAF1 172281 118 - 1 CCGAACAAGUUGUCAUUCCAUUGGCGAAGGUUAAUUUAUCGCUCGCAGCAAAUGAACUUAAACAGCCCACUGAUUA--CCGCUGAUGGGCAGUAGCUUGGGGUGAAGUCGGGCGGCUAAA .......(((((((....((((.((((.(((......)))..))))....))))........((.((((..(.(((--(.(((....))).))))).)))).))......)))))))... ( -30.80) >consensus UCAAACAAGUUGUCAUUCCAUUGAGGGAAGUUAAUUUAUCGCUCACAGUAAAUUAACUUCAAUGACCCACCGAUUGAUGCGCCGAUUGGCAGUAGCUAAGGGCAUAACCGAAUGAUUAAA ...........(((((((........(((((((((((((.(....).)))))))))))))....................(((..(((((....))))).)))......))))))).... (-25.91 = -25.00 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:11 2006