| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,507,355 – 13,507,450 |
| Length | 95 |
| Max. P | 0.691762 |
| Location | 13,507,355 – 13,507,450 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.65 |
| Mean single sequence MFE | -27.08 |
| Consensus MFE | -17.66 |
| Energy contribution | -17.72 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13507355 95 - 22407834 UGGAUG-GCAAAUUGGAGUGAUUCAAUUUGCACGAGCAUAUUGGAUU---------------------UUUCUUGUGUUGAUUCAAUUGGUCUCGACGC---UGAUUGCAUUAGUCUCUC .((((.-((((...((((.((((((((.(((....))).))))))))---------------------.)))).(((((((..(.....)..)))))))---...))))....))))... ( -26.10) >DroSec_CAF1 106131 95 - 1 UGGAUG-GCAAAUUGGAGUGAUUCAAUUUGCACGAGCAUAUUGGAUU---------------------UUUCUUGUGUUGAUUCAAUUGGUCUCGACGC---UGAUUGCAUUAGUCCCUC .((((.-((((...((((.((((((((.(((....))).))))))))---------------------.)))).(((((((..(.....)..)))))))---...))))....))))... ( -28.30) >DroSim_CAF1 107676 95 - 1 UGGAUG-GCAAAUUGGAGUGAUUCAAUUUGCACGAGCAUAUUGGAUU---------------------UUUCUUGUGUUGAUUCAAUUGGUCUCGACGC---UGAUUGCAUUAGUCCCUC .((((.-((((...((((.((((((((.(((....))).))))))))---------------------.)))).(((((((..(.....)..)))))))---...))))....))))... ( -28.30) >DroEre_CAF1 110640 95 - 1 UGGAUG-GCAAAUUGGAGUGAUUCAAUUUGCACGACCAUAUUGGAUU---------------------UUUCUUGUGUUGAUUCAAUUGCUGUCGACGC---UGAUUGCAUUAGUCCCUC (((.((-((((((((((....)))))))))).)).)))....(((((---------------------..((..((((((((.........))))))))---.)).......)))))... ( -28.30) >DroYak_CAF1 108548 95 - 1 UGGAUG-GCAAAUUGGAGUGAUUCAAUUUGCACGACCAUAUUGGAUU---------------------UUUCUUGUGUUGAUUCAAUUGCUCUCGACGC---UGAUUGCAUUAGUCCCUC (((.((-((((((((((....)))))))))).)).)))....(((((---------------------..((..(((((((...........)))))))---.)).......)))))... ( -26.20) >DroAna_CAF1 171616 119 - 1 UGGCCCGCCCGAGAGAAGAGAUUCAAUUUGCUCCUCCAUAUUGGACCUGGACCUGGACCUGGAGUCUCCUCCCUGCGUUAACUCAAUUAUUCGCAGUGCAAUUGAUUGAAUUAGUCCGU- .((....))...(.((...((((((((((((..(((((....((.((.......)).)))))))........(((((.(((.....)))..))))).)))...)))))))))..)))..- ( -25.30) >consensus UGGAUG_GCAAAUUGGAGUGAUUCAAUUUGCACGACCAUAUUGGAUU_____________________UUUCUUGUGUUGAUUCAAUUGGUCUCGACGC___UGAUUGCAUUAGUCCCUC .((((..((((((((((....))))))))))...........................................(((((((...........)))))))..............))))... (-17.66 = -17.72 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:10 2006