Locus 4705

Sequence ID 2L_DroMel_CAF1
Location 13,506,417 – 13,506,526
Length 109
Max. P 0.947350
window7445

overview

Window 5

Location 13,506,417 – 13,506,526
Length 109
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 79.72
Mean single sequence MFE -50.35
Consensus MFE -29.66
Energy contribution -29.80
Covariance contribution 0.14
Combinations/Pair 1.23
Mean z-score -2.71
Structure conservation index 0.59
SVM decision value 1.37
SVM RNA-class probability 0.947350
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13506417 109 - 22407834
CGAGGGAUGCCUGCCCAUAAACAAGGGACGACCACAGUACGUGAAAACGACGGCAAGGGGCGGGCAGGUAUUCCGUCUGUUGGCCGUCUUCGAGGAUGGCAAACAGGAU---------
...(((((((((((((........((.....))...((.(((....))))).((.....))))))))))))))).((((((.(((((((....))))))).))))))..--------- ( -51.80)
>DroPse_CAF1 153509 118 - 1
CGAGGGCUGUCUGCCCGUCAUCAAGGGACGGCCGCAGUACAUGAAGACGACGGCACGCGGCGGACAGGUGUUCCGUCUGCUGGCCGUUUUCGAGGAUGGCAAGCAGGAGAACGGACAC
......(((((((((((((.......))))((((..((........))..))))....)))))))))((((.(((((((((.(((((((....))))))).)))))....)))))))) ( -53.30)
>DroYak_CAF1 107607 109 - 1
CGAGGGAUGCCUGCCCAUAAACAAGGGACGUCCACAGUACGUGAAAACGACGGCAAGGGGCGGGCAGGUAUUCCGUCUGCUGGCCGUCUUCGAGGAUGGCAAACAGGAU---------
...(((((((((((((.....(....)..((((...((.(((....)))...))...))))))))))))))))).((((...(((((((....)))))))...))))..--------- ( -49.70)
>DroMoj_CAF1 139103 109 - 1
CGAGGGUUGCCUGCCCAGCAUGAAGCAAAGGCCGCAGUACGUGAAGACGACGGCGAGGGGAGGGCAGGUGUUCAAGCUGCUCGCUGUCUUUGAGGACGGAAAGCAGGAG---------
....((..((((((((.((.....))....((((..((.(.....)))..)))).......))))))))..))...(((((..((((((....))))))..)))))...--------- ( -44.50)
>DroAna_CAF1 170926 109 - 1
CGAGGGAUGCCUGCCAGUGGCCAAGGGUCGUCCCCAAUAUGUGAAGACGACCGCCCGGGGCGGUCAGGUGUUUCGGCUGCUGGCCGUGUUCGAGGACGGCAAGCAGGAG---------
.........((((((((..(((..(((.....))).......((((.((((((((...))))))).)...)))))))..)))(((((.(....).)))))..)))))..--------- ( -49.50)
>DroPer_CAF1 130594 118 - 1
CGAGGGCUGUCUGCCCGUCAUCAAGGGACGGCCGCAGUACAUGAAGACGACGGCACGCGGCGGACAGGUGUUCCGUCUGCUGGCCGUUUUCGAGGAUGGCAAGCAGGAGAACGGACAC
......(((((((((((((.......))))((((..((........))..))))....)))))))))((((.(((((((((.(((((((....))))))).)))))....)))))))) ( -53.30)
>consensus
CGAGGGAUGCCUGCCCAUCAUCAAGGGACGGCCGCAGUACGUGAAGACGACGGCAAGGGGCGGGCAGGUGUUCCGUCUGCUGGCCGUCUUCGAGGAUGGCAAGCAGGAG_________
.(((...((((((((.........((.....))...((.(((....))))).......))))))))....)))...(((((.(((((((....))))))).)))))............ (-29.66 = -29.80 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:09 2006