Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,505,638 – 13,505,731 |
Length | 93 |
Max. P | 0.980083 |
Location | 13,505,638 – 13,505,731 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 87.16 |
Mean single sequence MFE | -37.80 |
Consensus MFE | -30.49 |
Energy contribution | -31.27 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.10 |
Mean z-score | -4.00 |
Structure conservation index | 0.81 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.980083 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13505638 93 + 22407834 AAACUGGAUUCCG------AGUGAGCUGCAGCAGAAGCUGCCGCUUCCUUGGCUUCCAGAUUCUCCAGAUCCGAUUUGCUGAGGAAAAUAAUGGAAUCC ...(((((..(((------((..(((.(((((....))))).)))..)))))..)))))....((((..(((..........)))......)))).... ( -36.70) >DroPse_CAF1 152715 99 + 1 GUUCCGGCGUCCGCCAAGGAGGCAGCCGCUGCUGCAGCUGCCGCUUCCUUGGCCUCUAGAUUUUCCAAAUCGGUCUUGCUAAGGAAUAUAAUCGAGUCC (((((((((.(((((((((((((.((.((((...)))).)).))))))))))).....((((.....))))))...))))..)))))............ ( -40.70) >DroSec_CAF1 104414 93 + 1 AAACUGGAUUCCG------AGUGAGCUGCAGCAGAAGCUGCCGCUUCCUUGGCUUCCAGAUUCUCCAGAUCGGAUUUGCUGAGAAAAAUAAUGGAAUCC ...(((((..(((------((..(((.(((((....))))).)))..)))))..)))))....((((..((((.....)))).........)))).... ( -36.70) >DroSim_CAF1 105960 93 + 1 AAACUGGAUUCCG------AGUGAGCUGCAGCAGAAGCUGCCGCUUCCUUGGCUUCCAGAUUCUCCAGAUCGGAUUUGCUGAGAAAAAUAAUGGAAUCC ...(((((..(((------((..(((.(((((....))))).)))..)))))..)))))....((((..((((.....)))).........)))).... ( -36.70) >DroEre_CAF1 108907 93 + 1 AAACUGGAUUCCG------ACUGAGCUGCAGCGGACGCUGCUGCUUCCUUGGCUUCCAGAUUCUCCAGAUCGGUUUUGCUGAGGAAUAUAAUGGAAUCC .....((((((((------....(((.(((((....))))).)))((((..((..((.((((.....))))))....))..))))......)))))))) ( -38.20) >DroYak_CAF1 106828 93 + 1 AAACUGGAUUCCG------AUUGAGCUGCAGCAGAAGCUGCCGCUUCCUUGGCUUCCAGAUUCUCCAGAUCGGUUUUGCUGAGGAAAAUAAUGGAAUCC .....((((((((------.....((.(((((....))))).))(((((..((..((.((((.....))))))....))..))))).....)))))))) ( -37.80) >consensus AAACUGGAUUCCG______AGUGAGCUGCAGCAGAAGCUGCCGCUUCCUUGGCUUCCAGAUUCUCCAGAUCGGAUUUGCUGAGGAAAAUAAUGGAAUCC .....(((((((............((.(((((....))))).))(((((((((..((.((((.....))))))....)))))))))......))))))) (-30.49 = -31.27 + 0.78)
Location | 13,505,638 – 13,505,731 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 87.16 |
Mean single sequence MFE | -34.83 |
Consensus MFE | -28.80 |
Energy contribution | -28.97 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.12 |
Mean z-score | -3.22 |
Structure conservation index | 0.83 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13505638 93 - 22407834 GGAUUCCAUUAUUUUCCUCAGCAAAUCGGAUCUGGAGAAUCUGGAAGCCAAGGAAGCGGCAGCUUCUGCUGCAGCUCACU------CGGAAUCCAGUUU (((((((......(((((..((...(((((((....).))))))..))..)))))((.(((((....))))).)).....------.)))))))..... ( -35.60) >DroPse_CAF1 152715 99 - 1 GGACUCGAUUAUAUUCCUUAGCAAGACCGAUUUGGAAAAUCUAGAGGCCAAGGAAGCGGCAGCUGCAGCAGCGGCUGCCUCCUUGGCGGACGCCGGAAC ((.(((((((...((((....(......)....))))))))..)))((((((((...(((((((((....))))))))))))))))).....))..... ( -40.20) >DroSec_CAF1 104414 93 - 1 GGAUUCCAUUAUUUUUCUCAGCAAAUCCGAUCUGGAGAAUCUGGAAGCCAAGGAAGCGGCAGCUUCUGCUGCAGCUCACU------CGGAAUCCAGUUU (((((((......((((.(((....(((.....)))....)))))))...((..(((.(((((....))))).)))..))------.)))))))..... ( -34.40) >DroSim_CAF1 105960 93 - 1 GGAUUCCAUUAUUUUUCUCAGCAAAUCCGAUCUGGAGAAUCUGGAAGCCAAGGAAGCGGCAGCUUCUGCUGCAGCUCACU------CGGAAUCCAGUUU (((((((......((((.(((....(((.....)))....)))))))...((..(((.(((((....))))).)))..))------.)))))))..... ( -34.40) >DroEre_CAF1 108907 93 - 1 GGAUUCCAUUAUAUUCCUCAGCAAAACCGAUCUGGAGAAUCUGGAAGCCAAGGAAGCAGCAGCGUCCGCUGCAGCUCAGU------CGGAAUCCAGUUU (((((((......(((((..((....((((((....).))).))..))..)))))((.(((((....))))).)).....------.)))))))..... ( -31.90) >DroYak_CAF1 106828 93 - 1 GGAUUCCAUUAUUUUCCUCAGCAAAACCGAUCUGGAGAAUCUGGAAGCCAAGGAAGCGGCAGCUUCUGCUGCAGCUCAAU------CGGAAUCCAGUUU (((((((......(((((..((....((((((....).))).))..))..)))))((.(((((....))))).)).....------.)))))))..... ( -32.50) >consensus GGAUUCCAUUAUUUUCCUCAGCAAAACCGAUCUGGAGAAUCUGGAAGCCAAGGAAGCGGCAGCUUCUGCUGCAGCUCACU______CGGAAUCCAGUUU (((((((......(((((..((........(((((.....))))).))..)))))((.(((((....))))).))............)))))))..... (-28.80 = -28.97 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:08 2006