Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,503,031 – 13,503,127 |
Length | 96 |
Max. P | 0.604673 |
Location | 13,503,031 – 13,503,127 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 91.48 |
Mean single sequence MFE | -18.35 |
Consensus MFE | -14.77 |
Energy contribution | -14.97 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.05 |
Mean z-score | -2.21 |
Structure conservation index | 0.80 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604673 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13503031 96 + 22407834 AAACA---------AGUAAACCCAACAAAACCAAGUUAAUGGGU-------UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAA-AAGUUUGGCAUUUUGCCCUAAAA ((((.---------.(.(((((((((........))...)))))-------)).)................((((((....))))))..-..))))(((.....)))...... ( -18.00) >DroSec_CAF1 101810 96 + 1 AAACA---------AGUAAACCCAACAAAACCAAGUUAAUGGGU-------UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAA-AAGUUUGGCAUUUUGCCCUAAAA ((((.---------.(.(((((((((........))...)))))-------)).)................((((((....))))))..-..))))(((.....)))...... ( -18.00) >DroSim_CAF1 103352 96 + 1 AAACA---------AGUAAACCCAACAAAACCAAGUUAAUGGGU-------UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAA-AAGUUUGGCAUUUUGCCCUAAAA ((((.---------.(.(((((((((........))...)))))-------)).)................((((((....))))))..-..))))(((.....)))...... ( -18.00) >DroEre_CAF1 106324 96 + 1 AAACA---------AGUAAACCCAACAAAACCAUGUUAAUGGGU-------UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAA-AAGUUUGGCAUUUUGCCCUAAAA ((((.---------.(.((((((((((......)))...)))))-------)).)................((((((....))))))..-..))))(((.....)))...... ( -19.10) >DroYak_CAF1 104233 97 + 1 AAACA---------AGUAAACCCAACAAAACCAAGUUAAUGGGU-------UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAAAAAGUUUGGCAUUUUGCCCUAAAA .....---------.(.(((((((((........))...)))))-------)).)......((((......((((((....)))))).....))))(((.....)))...... ( -18.20) >DroAna_CAF1 167693 112 + 1 CAACAAACAACUGAAGUGAACCCAACAAAACCAAGUCAAUGGGUUGUGUUUUUCCAAAAAAGGACGACAAAUGACGAGAGAUCGUGUAA-AAGUUUGGCAUACUGCCCUAAAA ...(((((..........((((((((........))...)))))).((((..(((......))).))))....((((....))))....-..)))))((.....))....... ( -18.80) >consensus AAACA_________AGUAAACCCAACAAAACCAAGUUAAUGGGU_______UUCCAAAAAAGAACGACAAAAUACGAGAGAUCGUGUAA_AAGUUUGGCAUUUUGCCCUAAAA ...................(((((((........))...))))).................((((......((((((....)))))).....))))(((.....)))...... (-14.77 = -14.97 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:06 2006