Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,499,652 – 13,499,752 |
Length | 100 |
Max. P | 0.636458 |
Location | 13,499,652 – 13,499,752 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 78.58 |
Mean single sequence MFE | -11.80 |
Consensus MFE | -8.97 |
Energy contribution | -8.75 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.15 |
Mean z-score | -1.04 |
Structure conservation index | 0.76 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13499652 100 + 22407834 CCAACCUGCGCUGUUCGAAGCUAUCCCAAAUUGAAAACAAAAACUAAAAACAUAGCCAGGGUAUUAUAAAGUUUGUAUACCAAACAUAUCGUUAACUAAA ....((((.(((((..((.....)).....(((....)))...........)))))))))..........(((((.....)))))............... ( -12.70) >DroPse_CAF1 142138 81 + 1 CCAACCCACGCUGUUCUAAACUAUCCCC-------------------AAACUUAGCCAGGGUAUUAUAAAGUUUGUAUACCAAACAUAUCGUUAACUCAA ...((((..((((...............-------------------.....))))..))))........(((((.....)))))............... ( -10.95) >DroGri_CAF1 110481 79 + 1 CCAACCCGCGCUGUCUAAAGCUAUCCCUAU--------------------UUUAGUCAGGGUAUUAUAAAGUUUGUAUACCA-ACAUAUCGUUAAAUAAA .......((((((.((((((.........)--------------------))))).)))(((((.(((.....)))))))).-......)))........ ( -10.80) >DroEre_CAF1 102977 100 + 1 CCAACCUGCGCUGUUCUAAGCUAUCCCAAAUUAAUAAGAAAAACUAAAAACAUAGCCAGGGUAUUAUAAAGUUUGUAUACCAAACAUAUCGUUAACUAAA ....((((.(((((.....................................)))))))))..........(((((.....)))))............... ( -12.29) >DroAna_CAF1 162811 89 + 1 CCAACCUGCGCUGUUCUAAGCUAUCGA-----------GAAAACCAACCACAUAGCCAGGGUAUUAUGAAGUUUGUAUACCAAACAUAUCGUUAACUAAA ....((((.((((((((.........)-----------))...........)))))))))((...((((.(((((.....)))))...))))..)).... ( -13.10) >DroPer_CAF1 119617 81 + 1 CCAACCCACGCUGUUCUAAACUAUCCCC-------------------AAACUUAGCCAGGGUAUUAUAAAGUUUGUAUACCAAACAUAUCGUUAACUCAA ...((((..((((...............-------------------.....))))..))))........(((((.....)))))............... ( -10.95) >consensus CCAACCCGCGCUGUUCUAAGCUAUCCCA___________________AAACAUAGCCAGGGUAUUAUAAAGUUUGUAUACCAAACAUAUCGUUAACUAAA ...((((..((((.......................................))))..))))........(((((.....)))))............... ( -8.97 = -8.75 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:05 2006