Locus 4701

Sequence ID 2L_DroMel_CAF1
Location 13,499,529 – 13,499,621
Length 92
Max. P 0.991627
window7440

overview

Window 0

Location 13,499,529 – 13,499,621
Length 92
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 93.88
Mean single sequence MFE -22.36
Consensus MFE -19.04
Energy contribution -19.48
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -2.14
Structure conservation index 0.85
SVM decision value 2.28
SVM RNA-class probability 0.991627
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13499529 92 - 22407834
GCCACCUAAAGC------CUGACACACAGAUCUAGAAUGUUGGGAA-AAUAUUCGUUAGCUAUAGAUUGGAUGAUACAUCCAAAAGAUGGGCAGGGAAA
(((..(((.(((------(((.....))).....(((((((.....-)))))))....))).))).(((((((...)))))))......)))....... ( -23.80)
>DroSec_CAF1 98346 92 - 1
GCCACCUAAAGC------CUGACACACAGAUCUAGAAUGUUAGGAA-AAUAUUCGUUAGCUAUAGAUUGGAUGAUACAUCCAAAAGAUGGGCAGGGAAA
(((..(((.(((------(((.....))).....(((((((.....-)))))))....))).))).(((((((...)))))))......)))....... ( -22.90)
>DroSim_CAF1 99875 92 - 1
GCCACCUAAAGC------CUGACACACAGAUCUAGAAUGUUAGGAA-AAUAUUCGUUAGCUAUAGAUUGGAUGAUACAUCCAAAAGAUGGGCAGGGAAA
(((..(((.(((------(((.....))).....(((((((.....-)))))))....))).))).(((((((...)))))))......)))....... ( -22.90)
>DroEre_CAF1 102854 92 - 1
GCCACCUAAAGC------CUGACACACAGAUCUAGAAUGUUAAGAA-AAUAUUCGAUAGCUAUAGAUUGGAUGAUACAUCCGAAAGAUGAGCAGGGAAA
((((.(((.(((------(((.....))).....(((((((.....-)))))))....))).))).(((((((...)))))))....)).))....... ( -19.50)
>DroYak_CAF1 100452 99 - 1
GCCACCUAAAGCACACAUCUGACACACAGAUCUAGAAUGUUGGGAAAAAUAUUCGAUAGCUAUAGACUGGAUGAUACAUCCAAAAGAUGAGCAGGGAAA
((((.(((.(((....(((((.....)))))...(((((((......)))))))....))).)))..((((((...)))))).....)).))....... ( -22.70)
>consensus
GCCACCUAAAGC______CUGACACACAGAUCUAGAAUGUUAGGAA_AAUAUUCGUUAGCUAUAGAUUGGAUGAUACAUCCAAAAGAUGGGCAGGGAAA
(((..(((.(((......(((.....))).....(((((((......)))))))....))).))).(((((((...)))))))......)))....... (-19.04 = -19.48 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:04 2006