Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 199,083 – 199,182 |
Length | 99 |
Max. P | 0.807959 |
Location | 199,083 – 199,182 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 77.85 |
Mean single sequence MFE | -39.98 |
Consensus MFE | -24.24 |
Energy contribution | -25.18 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.40 |
Mean z-score | -1.75 |
Structure conservation index | 0.61 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 199083 99 - 22407834 AAGUUGGUGGUAGCUGCUGUUGUUGCGGUUGAGGCACCACCGACGCCUUUGAGCUGACCACGUGCAAUAUUUGCGGCUGGGCUGCUGAUGCCGCUUGCU ..(((((((((.((((((((....)))))...))))))))))))((...(.(((...(((..((((.....))))..)))...))).)....))..... ( -35.70) >DroPse_CAF1 16368 93 - 1 AGGUGGGCGGCAGCUGC------UGCGGCUGCGGCACCACGGAAGCCUUGGAGCUUACGACAUGCAGGAUCUGCGGUGGUGCUGCAGAUGUUGCCUGCU .((..(((((((((...------.))..(((((((((((((.((((......)))).)....(((((...))))))))))))))))).)))))))..)) ( -48.80) >DroEre_CAF1 15274 99 - 1 AAGUAGGUGGUAGCUGCUGUUGUUGCGGCUGAGGCACCACCGACGCCUUUGAGCUGACCACAUGCAAUAUUUGCGGUGGGGCUGCUGAUGCCGCUUGCU .(((((((((((((.(((.......((((((((((.........)))))..))))).((((.((((.....))))))))))).)))...)))))))))) ( -41.20) >DroWil_CAF1 15612 84 - 1 AUGUGGGUG---------------GAGGUUGAGCAACUACAGAAGCCUUGGAGCUGACCACAUGAAGGAUUUGCGGCGGUGCUGCCGAUGUGGCCUGUU (((((((((---------------(..(.....)..))))...(((......)))..))))))..(((.....(((((....)))))......)))... ( -24.40) >DroYak_CAF1 14403 99 - 1 AAGUAGGUGGUAGCUGCUGUGGUUGCGGCUGAGGCACCACCGACGCCUUCGAGCUGACCACAUGCAAUAUUUGCGGUGGGGCUGCUGAUGCCGCGUGCU .((((.((((((..(((((((((..((((((((((.........)))))..))))))))))).)))......((((.....))))...)))))).)))) ( -41.00) >DroPer_CAF1 16563 93 - 1 AGGUGGGCGGCAGCUGC------UGCGGCUGCGGCACCACGGAAGCCUUGGAGCUUACGACAUGCAGGAUCUGCGGUGGUGCUGCAGAUGUUGCCUGCU .((..(((((((((...------.))..(((((((((((((.((((......)))).)....(((((...))))))))))))))))).)))))))..)) ( -48.80) >consensus AAGUGGGUGGUAGCUGC______UGCGGCUGAGGCACCACCGAAGCCUUGGAGCUGACCACAUGCAAGAUUUGCGGUGGGGCUGCUGAUGCCGCCUGCU .((((((((((((((((.......))))))..(((.((((....((......))........(((((...))))))))).)))......)))))))))) (-24.24 = -25.18 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:08 2006