Locus 4699

Sequence ID 2L_DroMel_CAF1
Location 13,494,040 – 13,494,143
Length 103
Max. P 0.665262
window7437

overview

Window 7

Location 13,494,040 – 13,494,143
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 94.76
Mean single sequence MFE -20.32
Consensus MFE -16.08
Energy contribution -16.64
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.70
Structure conservation index 0.79
SVM decision value 0.28
SVM RNA-class probability 0.665262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13494040 103 - 22407834
CCUGUGUUGAAACUCACGCAAUGCGAGCGAACAAACAAUACCAGAAAUAAAGGUUAAAUAGAAAUGUUGUAAAAAUUACAACAAAGCGUCGAAAGUUCAUUCA
..(((((.(.....))))))....(((.((((.......(((.........)))..........(((((((.....)))))))...........)))).))). ( -16.60)
>DroSec_CAF1 92763 103 - 1
CGUGUGUUGAAACUCACGCAAUGCGAGGAAACAAACAAUACCAGAAAUAAAGGUUAAAUAGAAAUGUUGUAAAAAUUACAACAAAGCGUCGAAAGUUCAUUCA
.(((((........))))).((((..(....)................................(((((((.....)))))))..))))(....)........ ( -17.60)
>DroSim_CAF1 94323 103 - 1
CGUGUGUUGAAACUCACGCAAUGCGAGGAAACAAACAAUGCCAGAAAUAAAGGUUAAAUAGAAAUGUUGUAAAAAUUACAACAAAGCGUCGAAAGUUCAUUCA
.(((((........))))).((((..(....).......(((.........)))..........(((((((.....)))))))..))))(....)........ ( -17.90)
>DroEre_CAF1 97466 103 - 1
CGUGUGUUGAAACUCACGCAAUGCGAGGGCACAAACAAUGCCAGAAAUAAAGGUUAAAUAGAAAUGUUGUAAAAGCUACAACAAAGCGUCGAAAGUUCUUUCA
.(((((........))))).((((...((((.......))))......................(((((((.....)))))))..)))).((((....)))). ( -22.30)
>DroYak_CAF1 94892 103 - 1
CGUGUGUUGGGACUCACGCAAUGCGAGGGAACAAACAAUACCAGAAAUGGAGGUUAAAUAGAAAUGUUGUAAAAAUUACAACAAAGCGUCGAAAGUUCUUUCA
.(((((........))))).....((((((((.(((....(((....)))..))).........(((((((.....)))))))...........)))))))). ( -27.20)
>consensus
CGUGUGUUGAAACUCACGCAAUGCGAGGGAACAAACAAUACCAGAAAUAAAGGUUAAAUAGAAAUGUUGUAAAAAUUACAACAAAGCGUCGAAAGUUCAUUCA
.(((((........))))).....((..((((.......(((.........)))..........(((((((.....)))))))...........))))..)). (-16.08 = -16.64 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:02 2006