Locus 4698

Sequence ID 2L_DroMel_CAF1
Location 13,491,862 – 13,491,958
Length 96
Max. P 0.939262
window7436

overview

Window 6

Location 13,491,862 – 13,491,958
Length 96
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 80.23
Mean single sequence MFE -21.52
Consensus MFE -9.94
Energy contribution -11.34
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -2.61
Structure conservation index 0.46
SVM decision value 1.30
SVM RNA-class probability 0.939262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13491862 96 - 22407834
GACUGGCCAACAAAACAAUUUAAAGGCAAAGCCACAAAGGAA----AGUGGCGAAGUUUUCCCAAACGGAACCCGGGAAACCGAAAAAGUUAGCAUUUAA
.....((.(((.............((....(((((.......----.)))))......((((.....))))))(((....))).....))).))...... ( -22.80)
>DroVir_CAF1 142810 82 - 1
------GCAAC-AAAAUAUUUAAAGGCAAAAUCACAAAAGAAUGAAGCAGUCCAAGUUCUU--UUACGGAAGCCCGGAAG-U--AAA----GGCA--AAA
------((...-............(((....((..((((((((............))))))--))...)).)))(....)-.--...----.)).--... ( -10.50)
>DroSim_CAF1 92181 96 - 1
GACUGGCCAACAAAACAAUUUAAAGGCAAAGCCACAAAGGAA----AGUGGCGAAGUUUUCCCAAACGGAACCCGGGAAACCGAAAAAGUUAGCAUUUAA
.....((.(((.............((....(((((.......----.)))))......((((.....))))))(((....))).....))).))...... ( -22.80)
>DroEre_CAF1 95335 96 - 1
GGCUGGGCAACAAAACAAUUUAAAGGCAAAGCCACAAAGAAC----AGUGGCGAAGUUUUCCCAAACGGAACCCGGGAAACCGAAAAAGUUAGCAUUUAA
.((((((.................(((...(((((.......----.)))))...)))((((.....)))))))((....)).........)))...... ( -23.70)
>DroYak_CAF1 92688 96 - 1
GACUGGCCAACAAAACAAUUUAAAGGCAAAGCCACAAAGAAA----AGUGGCGAAGUUUUCGCAAACGGAACCCGGGAAACCGAAAAAGUUUGCAUUUAA
((((.(((................)))...(((((.......----.)))))..))))...((((((......(((....))).....))))))...... ( -27.79)
>consensus
GACUGGCCAACAAAACAAUUUAAAGGCAAAGCCACAAAGGAA____AGUGGCGAAGUUUUCCCAAACGGAACCCGGGAAACCGAAAAAGUUAGCAUUUAA
.........................((...(((((............))))).....................(((....))).........))...... ( -9.94 = -11.34 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:01 2006