Locus 4695

Sequence ID 2L_DroMel_CAF1
Location 13,488,230 – 13,488,342
Length 112
Max. P 0.778580
window7428

overview

Window 8

Location 13,488,230 – 13,488,342
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.58
Mean single sequence MFE -27.17
Consensus MFE -24.40
Energy contribution -24.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.90
SVM decision value 0.55
SVM RNA-class probability 0.778580
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13488230 112 - 22407834
U-U--GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCUU-UUGGGAAAACUUGAUACCAUU----
.-.--....((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))))-)))))).))))))))......---- ( -25.70)
>DroVir_CAF1 138489 113 - 1
U-U--GGCUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCAUUUUGGGAAAACUUGAUACCAUU----
.-(--((..((((((((....))))))))....((((((((....((((((((((....)))((.((.(((((......))))).))...))..))))))).)))))))).)))..---- ( -28.00)
>DroPse_CAF1 130260 116 - 1
U-U--GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCUU-UUGGGAAAACUUGAUACCAUUAUUA
.-.--....((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))))-)))))).)))))))).......... ( -25.70)
>DroWil_CAF1 138438 115 - 1
U-UGUGGCUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCUUUUUGGGAAAACUUGAUACCAUU----
.-.((((..((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))).))))))).)))))))).)))).---- ( -28.60)
>DroMoj_CAF1 117358 114 - 1
UUU--GGCUUUGUGGAACAAUUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCUUGUUGGGAAAACUUGAUACCAUU----
..(--((..((((((((....))))))))....((((((((....(((((........((((((.((.(((((......))))).))...))))))))))).)))))))).)))..---- ( -29.30)
>DroPer_CAF1 106619 116 - 1
U-U--GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCUU-UUGGGAAAACUUGAUACCAUUAUUA
.-.--....((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))))-)))))).)))))))).......... ( -25.70)
>consensus
U_U__GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCUU_UUGGGAAAACUUGAUACCAUU____
.........((((((((....))))))))....((((((((....((((((.(((....)))((.((.(((((......))))).))...))...)))))).)))))))).......... (-24.40 = -24.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:54 2006