Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,487,101 – 13,487,204 |
Length | 103 |
Max. P | 0.781650 |
Location | 13,487,101 – 13,487,204 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 83.46 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -23.78 |
Energy contribution | -23.37 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.23 |
Mean z-score | -1.89 |
Structure conservation index | 0.82 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13487101 103 + 22407834 UUUCUUUGUAUAUGUGUAACGUAAUGAUCACCUGCGUGAUUGCCU------C-UAUGCAAUUGCGCUGUGCCGCUUACGUUACCGUCUUGCAGUUGGUUGUAAUUUGAAA .....(((((.(((.(((((((((.(..(((..(((..(((((..------.-...)))))..))).)))...)))))))))))))..)))))................. ( -32.10) >DroVir_CAF1 136847 103 + 1 UUAAUUUUUGUAUGUGCAACGUAUUGAACACUUACGUAAUUGCUG------CAAACGCAUCAACGUUGUGCCAUU-ACGUUGCCGUCUUGCAGUUGGUUGUAAUUUGAAA .(((((.(((((((.((((((((.((..(((..((((...(((..------.....)))...)))).))).)).)-))))))))))...))))..))))).......... ( -25.20) >DroPse_CAF1 129059 109 + 1 UUUCUUUGUGUAUGUGUAACGUAAUGAUCAUCUGCGUGAUUGCCCAUUACGU-UGUGCAAUUACGUUGUGCCGCUUACGUUGCCGUCUUGCAGUUGGUUGUAAUUUGAAA .....(((((.(((.(((((((((.(..(((..((((((((((.((......-)).)))))))))).)))...)))))))))))))..)))))................. ( -30.10) >DroGri_CAF1 95387 104 + 1 UUUGUUUUUGUAUGUGUAACGUAAUGAACACUUACGUAAUUGCCG------UAAACGCAACAACGUUGUGCCGUUUACGUUGCCGUCUUGCAGUUGGUUGUAAUUUGAAA ...........(((.(((((((((....(((..((((..((((..------.....))))..)))).)))....)))))))))))).((((((....))))))....... ( -23.30) >DroAna_CAF1 149904 103 + 1 AUUCUUUGUGUAUGUGUAACGUAAUGAUCACCUGCGUGGUUGCCG------C-AAUGCAAUGGCGUAGUGUCGCUUACGUUACCGUCUUGCAGUUGGUUGUAAUUUGAAA .....(((((.(((.((((((((((((.(((.(((((.(((((..------.-...))))).))))))))))).))))))))))))..)))))................. ( -32.50) >DroPer_CAF1 105347 109 + 1 UUUCUUUGUGUAUGUGUAACGUAAUGAUCAUCUGCGUGAUUGCCCAUUACGU-UGUGCAAUUACGUUGUGCCGCUUACGUUGCCGUCUUGCAGUUGGUUGUAAUUUGAAA .....(((((.(((.(((((((((.(..(((..((((((((((.((......-)).)))))))))).)))...)))))))))))))..)))))................. ( -30.10) >consensus UUUCUUUGUGUAUGUGUAACGUAAUGAUCACCUGCGUGAUUGCCG______C_AAUGCAAUUACGUUGUGCCGCUUACGUUGCCGUCUUGCAGUUGGUUGUAAUUUGAAA ...........(((.(((((((((....(((..((((.(((((.............))))).)))).)))....)))))))))))).((((((....))))))....... (-23.78 = -23.37 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:52 2006