Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,367,736 – 1,367,855 |
Length | 119 |
Max. P | 0.920518 |
Location | 1,367,736 – 1,367,855 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 88.49 |
Mean single sequence MFE | -37.99 |
Consensus MFE | -28.80 |
Energy contribution | -31.92 |
Covariance contribution | 3.12 |
Combinations/Pair | 1.03 |
Mean z-score | -2.25 |
Structure conservation index | 0.76 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1367736 119 - 22407834 CUUCUGAGGCGAUUAUCUGGUUUCGCUCGGGCCCAUAAAUUUGUCCACGCCCAUAACUGGGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCAGUUCUCCAGAUCUCCAGCCAGA .......(((....((((((....(((.((((((..((((.((.((.((((((....))))).....((....))).)).)).))))...)))))))))...)))))).....)))... ( -42.20) >DroSec_CAF1 124729 119 - 1 CUUCUGAGGCGAUUAUCUGGUUUCGCUCGGCCCCAUAAAUUUGUCCACGCCCAUAACUGAGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCAGUUCUCCAGAUCUCCAGCCAGA .......(((....((((((....(((.(((((((.((((.((.((.(((.......((......))......))).)).)).)))).))))))).)))...)))))).....)))... ( -38.12) >DroSim_CAF1 129167 119 - 1 CUUCUGAGGCGAUUAUCUGGUUUCGCUCGGCCCCAUAAAUUUGUCCACGCCCAUAACUGAGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCAGUUCUCCAGAUCUCCAGCCAGA .......(((....((((((....(((.(((((((.((((.((.((.(((.......((......))......))).)).)).)))).))))))).)))...)))))).....)))... ( -38.12) >DroEre_CAF1 143096 119 - 1 CUUCUGAGGCGAUUAUCUGGUUUCGCUCGGUCCCAUAAAUUUGUCCACGCCCAUAACUGGGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCAGUUCUCCAGAUCUCCAUCCAGG ...(((.((.((...(((((....(((.(..((((.((((.((.((.((((((....))))).....((....))).)).)).)))).))))..).)))...))))))).))...))). ( -38.60) >DroAna_CAF1 150901 97 - 1 AUACCAAGGCGAUUAUCUCGUUUUGCUGGG-CCCAUAAAUUUGUCCACGCCCAUAACUGGGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCUG--------------------- ....((((((((.....))))))))..(((-(((..((((.((.((.((((((....))))).....((....))).)).)).))))...))))))..--------------------- ( -32.90) >consensus CUUCUGAGGCGAUUAUCUGGUUUCGCUCGGCCCCAUAAAUUUGUCCACGCCCAUAACUGGGCUGACAACUUAAGUGCGGUCAUGUUUUUGGGGUCCAGUUCUCCAGAUCUCCAGCCAGA .......(((....((((((....(((.(((((((.((((.((.((.((((((....))))).....((....))).)).)).)))).))))))).)))...)))))).....)))... (-28.80 = -31.92 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:54 2006