Locus 4689

Sequence ID 2L_DroMel_CAF1
Location 13,475,199 – 13,475,292
Length 93
Max. P 0.500000
window7412

overview

Window 2

Location 13,475,199 – 13,475,292
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -37.60
Consensus MFE -29.47
Energy contribution -29.17
Covariance contribution -0.30
Combinations/Pair 1.14
Mean z-score -1.20
Structure conservation index 0.78
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13475199 93 - 22407834
UUCUUCUGCUGUCGUUGGCGCUGCCGCGCCUGGCGCGAAGCCAGCGAGGCGCCACCAGCAGCUGCAUACAUCUUGAUCGAGGGGAGGGACUUC
((((((((((((.(.(((((((....(((.((((.....))))))).))))))).).)))))........((((....))))))))))).... ( -40.60)
>DroVir_CAF1 123732 81 - 1
UUCUUCUGCUGUCGCUGGCGUUGACGCGCCUGGCGCGAGGCCAGCGAGGCGCCGCCAGCAGCUGCAUACAUUUUGUUUGA------------U
......(((.((.(((((((.....((((((.((.........)).))))))))))))).)).)))..............------------. ( -34.20)
>DroSim_CAF1 75890 93 - 1
UUCUUCUGCUGGCGUUGGCGCUGACGCGCCUGGCGCGAAGCCAGCGAGGCGCCACCAGCAGCUGCAUACAUCUUGAUCGAGGGGAGGGACUAC
((((((((((((...(((((((....(((.((((.....))))))).))))))))))))...........((((....))))))))))).... ( -40.40)
>DroEre_CAF1 79228 93 - 1
UUCUUCUGCUGGCGUUGGCGCUGCCGCGCCUGGCGGGAGGCCAGCGAGGCGCCACCAGCAGCUGCAUACAUCUUGCUCGAGGAGAGGGACUUC
((((((((((((...(((((((....(((.((((.....))))))).))))))))))))....(((.......)))...)))))))....... ( -40.90)
>DroWil_CAF1 121836 90 - 1
UUCUUCUGCUGUCGCUGGCGUUGACGUGCCUGGCGCGAGGCCAAAGAGGCACCGCCAGCAGCUGCAUACAUCUUGG---AAGAUUGGGCGUUA
.((((((((.((.(((((((.....(((((((((.....)))....))))))))))))).)).)))..(.....))---)))).......... ( -33.80)
>DroYak_CAF1 76116 79 - 1
UUCUUCUGCUGGCGUUGGCGCUGCCGCGCCUGGCGGGAGGCCAGCGAGGCGCCACCAGCAGCUGCAUACAUCUUGAUCG--------------
.....(((((((...(((((((....(((.((((.....))))))).))))))))))))))..................-------------- ( -35.70)
>consensus
UUCUUCUGCUGGCGUUGGCGCUGACGCGCCUGGCGCGAGGCCAGCGAGGCGCCACCAGCAGCUGCAUACAUCUUGAUCGAGG_GAGGGACUUC
.....((((((..((.((((((....(((.((((.....))))))).))))))))))))))................................ (-29.47 = -29.17 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:39 2006