Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,473,490 – 13,473,599 |
Length | 109 |
Max. P | 0.508117 |
Location | 13,473,490 – 13,473,599 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 85.16 |
Mean single sequence MFE | -23.88 |
Consensus MFE | -15.64 |
Energy contribution | -16.48 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.12 |
Mean z-score | -1.76 |
Structure conservation index | 0.65 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13473490 109 + 22407834 GUCUGAUAUCAGCCCAAAAAAAAACUUGAACUUUCAUUGCACGAACAUGUUAAUGAAGUGGUAUA-AAUGGUUGAAAAGAGAUUGCAAAGAGUUCAAAGUUUAGGGGUCA ...........((((......(((((((((((((..(((((........(((((.(.........-..).)))))........)))))))))))).))))))..)))).. ( -19.99) >DroSec_CAF1 72893 104 + 1 GUCUGAUAUCAGCCCC------AACUUGAACUUUCAUUGCACGAACAUGUUAAUGAAGUGGAAUAAAAUGGCUGAAAAGAGAUUGCAAAGAGUUUAAAGUUUAGGGGGCA ...........(((((------((((((((((((.(((.(((...(((....)))..))).)))..(((..((....))..)))....))))))).)))))...))))). ( -25.90) >DroSim_CAF1 74192 108 + 1 GUCUGAUAUCAGCCCCGA--AAAACUUGAACUUUCAUUGCACGAACAUGUUAAUGAAGUGGAAUAAAAUGGCUGAAAAGAUAUUGCAAAGAGUUGAAAGUUUAGGGGGCA ...........(((((..--.....(((((((((((((.(((...(((....)))..))).)))..((((.((....)).))))..........))))))))))))))). ( -26.91) >DroEre_CAF1 77558 104 + 1 GUCUGAUAUCAGCCCA-A--AAAACCUGAACUUUCAUUGCACGAACCUUUUAAUGAAGUGGAAUAAAAUGGUCGAAAAGAGAUUGCA---AGUUGAAAGUUUGGGGGGCA ...........((((.-.--....((..((((((((((((((((.(((((((...........))))).))))).........))))---)..))))))))..)))))). ( -27.70) >DroYak_CAF1 74406 94 + 1 -------------CCA-C--AAAACUUGAACUUUCAUUGCACGAACAUGUUAAUGAAGUGGAAGAAAAUGGUUGAAAACAGAUUGCUAAGAGUUGAAAGUUUAGGGGGCA -------------...-.--....((((((((((((((.(((...(((....)))..))).)).....((((............)))).....))))))))))))..... ( -18.90) >consensus GUCUGAUAUCAGCCCA_A__AAAACUUGAACUUUCAUUGCACGAACAUGUUAAUGAAGUGGAAUAAAAUGGUUGAAAAGAGAUUGCAAAGAGUUGAAAGUUUAGGGGGCA ...........((((.........((((((((((((((.(((...(((....)))..))).)).......((............)).......)))))))))))))))). (-15.64 = -16.48 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:38 2006