Locus 4687

Sequence ID 2L_DroMel_CAF1
Location 13,468,839 – 13,468,956
Length 117
Max. P 0.925087
window7410

overview

Window 0

Location 13,468,839 – 13,468,956
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 95.21
Mean single sequence MFE -26.00
Consensus MFE -23.62
Energy contribution -23.54
Covariance contribution -0.08
Combinations/Pair 1.11
Mean z-score -1.46
Structure conservation index 0.91
SVM decision value 1.17
SVM RNA-class probability 0.925087
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13468839 117 + 22407834
UGAAAGCGGAAUACGGAAAGAUAAAUAAUCCACGCGAGGGAAAAAAGAUAGAAAGUUGCUUUUGCUUAGUCAGAAGUCAACUGCUAUUUUAAUAUCGUAGGAACUGCAACUUCAAGC
((((.((((..(((((............(((.(....))))...(((((((..(((((((((((......)))))).))))).)))))))....)))))....))))...))))... ( -29.20)
>DroSec_CAF1 68331 117 + 1
UGAAAGCGGAAUACGGAAAGAUAAAUAAUCCACGCGAGGGAAAAAAGAUAGAAAGUUGCUUUUGCUUAGUCAGAAGUCAACUGCUAUUUUAAUAUGGUAGAGACUGCAACUUCAAGC
((((.((((..(((..............(((.(....))))...(((((((..(((((((((((......)))))).))))).)))))))......)))....))))...))))... ( -26.40)
>DroSim_CAF1 69554 117 + 1
UGAAAGCGGAAUACGGAAAGAUAAAUAAUCCACGCGAGGGAAAAAAGAUAGAAAGUUGCUUUUGCUUAGUCAGAAGUCAACUGCUAUUUUAAUAUGGUAGAGACUGCAACUUCAAGC
((((.((((..(((..............(((.(....))))...(((((((..(((((((((((......)))))).))))).)))))))......)))....))))...))))... ( -26.40)
>DroEre_CAF1 72859 117 + 1
UGAAGGCGGAAUACGGAAAGAUAAAUAAUCCACGCGAGGGAAAAAAGAUAGAAUGUUGCUUUUGCUUAGUCAGAAGUCAACUGCUACUUUAAUAUGGUAGAAUUUGCAACUCGAAGC
.((..(((((.(((..............(((.(....))))..((((.(((...((((((((((......)))))).))))..)))))))......)))...)))))...))..... ( -23.90)
>DroYak_CAF1 69631 117 + 1
UGAAAGCGGAAUGCGGAAAGAUAAAUAAUCCACGCGAGGGAAAAAAGAUAGAAAGUUGCUUUUGCUUAGUCAGAAGUCAAGUGCUAUUUUAAUAUGGUGGAAUCUGCAACUUCAAGC
.....((.(((((((((...........(((.(....))))...(((((((..(.(((((((((......)))))).))).).)))))))............))))))..)))..)) ( -24.10)
>consensus
UGAAAGCGGAAUACGGAAAGAUAAAUAAUCCACGCGAGGGAAAAAAGAUAGAAAGUUGCUUUUGCUUAGUCAGAAGUCAACUGCUAUUUUAAUAUGGUAGAAACUGCAACUUCAAGC
.....((((..(((..............(((.(....))))...(((((((...((((((((((......)))))).))))..)))))))......)))....)))).......... (-23.62 = -23.54 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:37 2006