Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,462,389 – 13,462,480 |
Length | 91 |
Max. P | 0.939703 |
Location | 13,462,389 – 13,462,480 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 91.88 |
Mean single sequence MFE | -20.84 |
Consensus MFE | -16.62 |
Energy contribution | -16.98 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -2.04 |
Structure conservation index | 0.80 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13462389 91 - 22407834 GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCUUUUAGUCG---CU--AUUCCUUUUCAUUCUAUUAUUGAUUGAUUCGCUUUUGAG (((((((((((((..((((((.(((((((((((((....))))))))...---..--)))))))))))...)))).)))))))))........... ( -21.60) >DroSec_CAF1 61969 91 - 1 GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCUUUUAGUCG---CU--UUUCCUUUUCUUUUUAUUAUUGAUUGAUUCGCUUUUGAG ((((((((((((((..(((((.((...((((((((....))))))))...---))--...))))).....))))).)))))))))........... ( -21.10) >DroSim_CAF1 63177 91 - 1 GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCUUUUAGUCG---CU--UUUCCUUUUCAUUCUAUUAUUGAUUGAUUCGCUUUUGAG (((((((((((((..((((((.((((.((((((((....))))))))...---..--.))))))))))...)))).)))))))))........... ( -20.80) >DroEre_CAF1 66539 96 - 1 GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCCGUUGGUCGUAUCUGCUUUUCCUUGCAUUCUAUUAUUGAUUGAUUUGCCUUUGAG (((((((((.(..((..(.((..(((((....))).))..)).)..))..).))(((........)))..........)))))))........... ( -18.50) >DroYak_CAF1 62907 93 - 1 GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCUUUUAGUCG---CUGCUUUUCCUUGCAUUCUAUUAUUGAUUGAUUCGCCUUUGAG .((((.((((.((((..(..(((((((((((((((....))))))))...---..((........)))))))))..)..)))).))))...)))). ( -22.20) >consensus GUCAAUCGAAAUAAUUGAAGGUGGAAUUUAAAAGUAUCUGCUUUUAGUCG___CU__UUUCCUUUUCAUUCUAUUAUUGAUUGAUUCGCUUUUGAG (((((((((((((..((((((.((((.((((((((....))))))))...........))))))))))...)))).)))))))))........... (-16.62 = -16.98 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:29 2006