Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,448,519 – 13,448,636 |
Length | 117 |
Max. P | 0.554766 |
Location | 13,448,519 – 13,448,636 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -33.54 |
Consensus MFE | -21.74 |
Energy contribution | -22.83 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.36 |
Mean z-score | -1.63 |
Structure conservation index | 0.65 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13448519 117 + 22407834 ACUAAGAUCUUAAGCAAAUCGCUACCAAA--AUUUUUGGCAAUGAUCAGAAGGGGUCGUUCUUUUAGUCUGGCCAGCUCGAGAGCGGGAAGUAUCUGUUCCACUUGAUCAAUCUUAGCC .(((((((....(((.....))).((((.--....))))...((((((((...(((((..(.....)..)))))...))(.(((((((.....))))))))...))))))))))))).. ( -29.00) >DroSec_CAF1 55448 117 + 1 ACUAAGAUCUUAAGCAAAUCGCUACCAAA--AUUUUUGGCAAUGAUCAGAAGGGGUCGUUCUUUUAAUCUCGCCAACUCGAGAGCGCGAAGGAUCUGAUCCACUUGAUCAAUUUUGGCC .(((((((....(((.....))).((((.--....))))...(((((((...((((((.((((((..(((((......)))))....))))))..))))))..)))))))))))))).. ( -31.20) >DroSim_CAF1 56623 117 + 1 ACUAAGAUCUUAAGCAAAUCGCUACCAAA--AUUUUUGGCAAUGAUCAGAAGGGGUCGUUCCUUUAAUCUCGCCCACUCGAGAGCGGGAAGGAUCUGAUCCACUUGAUCAAUUUUGGCC .(((((((....(((.....))).((((.--....))))...(((((((...((((((.((((((..(((((......)))))....))))))..))))))..)))))))))))))).. ( -35.00) >DroEre_CAF1 59789 117 + 1 ACCAAGAUCUUUAGCAAAUCGCUGCCAAA--AUUUUUGGCAAUGAUCAGAAGGGGUCGUUCUUUCAGUCUGGCCAACUCCAGAGCGGGCAGGAUCUGUUCCACUUGAUCAAUCUCUGCC .((..(((((((..(..((((.((((((.--....)))))).))))..).)))))))..........(((((......)))))..))(((((((.((.((.....)).))))).)))). ( -31.30) >DroYak_CAF1 56303 117 + 1 ACCAAGAUCUUAAGCAAAUCGCUGCCAAA--AUUUUUGGCAACUAUCAGAAGGGGACGUUCUUUCAGUCUGGCCAACUCCAGAGCGGGAAGGAUCUGUUCCACUUGAUCAAUCUUGGCC .(((((((....(((.....)))(((((.--....)))))....(((((...(((((((((((((..(((((......)))))...))))))))..)))))..)))))..))))))).. ( -37.90) >DroPer_CAF1 70357 117 + 1 ACCAAAGCCUUUACUACCU--CUUCUGAUAUAUCAGUGGCUAUGAUCAGGAGCGGUUGUUCCCUGCUCUUGGCCAACUCCAGAGCGGGCAGAAUAUCUUCCAGCCGUUCAACGUGGGCC .(((.((((..........--...((((....)))).))))........(((((((((...((((((((.((......))))))))))..(((....))))))))))))....)))... ( -36.84) >consensus ACCAAGAUCUUAAGCAAAUCGCUACCAAA__AUUUUUGGCAAUGAUCAGAAGGGGUCGUUCUUUUAGUCUGGCCAACUCCAGAGCGGGAAGGAUCUGUUCCACUUGAUCAAUCUUGGCC .(((((((................(((((.....)))))...(((((((((.(((((.(((((....(((((......)))))..))))).))))).)))....))))))))))))).. (-21.74 = -22.83 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:28 2006