| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,448,079 – 13,448,199 |
| Length | 120 |
| Max. P | 0.585534 |
| Location | 13,448,079 – 13,448,199 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.50 |
| Mean single sequence MFE | -42.93 |
| Consensus MFE | -21.90 |
| Energy contribution | -22.68 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13448079 120 + 22407834 CACCAUCACUUAUGGCCACUCGAACGGCGUGAAGGGCAUCGUUGAAGCGAUCCUUUCGCUCGCUCACCUCCAGCUCACUGGUACCGCCCACGAAAAUGGUGGCCAGGUGGCCCUGCAAGC .............((((((..((.(((.((((((((.(((((....)))))))))))))))).))............((((..(((((.........)))))))))))))))........ ( -43.80) >DroPse_CAF1 95228 120 + 1 UGCCAUCACUGAUGGCCCCAUGCAUGGCAUGAAGGGCGUCAUUGAGUCGGUCCUUCUUCUCGCUGACCUCCAGAUCGUUGGCCCCUCCCACGUAGAUGGUGGCCAGAUGGCCAAGGAGUC .((((((.(((...(((((((((...)))))..))))((((.((((..((....))..)))).))))...))).....(((((((((.......)).)).)))))))))))......... ( -44.70) >DroSec_CAF1 55008 120 + 1 CACCAUCACUUAUGGCCACUCGAACGGCGUGAAGGGCAUCGUUGAAGCGAUCCUUUCGCUCGCUCACCUCCAGCUCACUGGUACCGCCCACGAAAAUGGUGGCCAGUUGACCCUGCAAGC .....(((....((((((((((...(((((((((((.(((((....)))))))))))))..........((((....))))....)))..))).....)))))))..))).......... ( -40.40) >DroEre_CAF1 59349 120 + 1 CGCCAUCACUGAUGGCCACUCGAACCGCAUGAAGGGCAUCAUUGAAGCGAUCCUUUCGCUCGCUCACCUCCAGUUCACUGGUGCCGCCCACAAAAAUGGUGGCCAGGUGGCCCUGCAAGC .((((((...))))))..........((.((.(((((......((.((((.....))))))...(((((((((....)))).((((((.........)))))).)))))))))).)).)) ( -46.60) >DroWil_CAF1 89056 120 + 1 UGCCAUCGCUGAUGGCUACUUUUACCGAGUGAAGUGCAUCGUUGAGACGAUCCUUUUUCUCAUCGAUUUCCAGUUCACUGUCACCGCCUACAUGGACAAUGGCCACAUGACCCAUUAGCC .......((((((((............((((((.((.((((.(((((.((....)).))))).))))...)).))))))((((..(((............)))....)))))))))))). ( -35.70) >DroPer_CAF1 69917 120 + 1 UGCCAUCACUGAUGGCCCCAUGCAUGGCAUGAAGGGCGUCAUUGAGACGGUCCUUCUUCUCGCUGACCUCCAGAUCGUUGGCCCCUCCCACGUAGAUGGUGGCCAGAUGGCCAAGGAGUC .((((((.(((...(((((((((...)))))..))))((((.(((((.((....)).))))).))))...))).....(((((((((.......)).)).)))))))))))......... ( -46.40) >consensus CGCCAUCACUGAUGGCCACUCGAACGGCAUGAAGGGCAUCAUUGAAGCGAUCCUUUCGCUCGCUCACCUCCAGAUCACUGGCACCGCCCACGAAAAUGGUGGCCAGAUGGCCCAGCAAGC .((((((.....(((((((.((.....))....((((........(((((.........))))).....((((....))))....)))).........)))))))))))))......... (-21.90 = -22.68 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:27 2006