| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,446,780 – 13,446,875 |
| Length | 95 |
| Max. P | 0.573918 |
| Location | 13,446,780 – 13,446,875 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 82.03 |
| Mean single sequence MFE | -20.23 |
| Consensus MFE | -15.74 |
| Energy contribution | -15.94 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.573918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13446780 95 + 22407834 UCAGGCACCUCGGCUAAAAAAGAAAGU--AAAAAACAAACACUUGUUUUUUUUUAUACGUGAAAUUGUAUUGAUUUGGCUUUUUAAGAGGGCCCUGC .((((..(((((((((((.........--(((((((((....)))))))))((.(((((......))))).)))))))))......))))..)))). ( -23.10) >DroSec_CAF1 53724 93 + 1 UCAGGCACCUCGGUUAAAAAAGAAAAU---AAAAACAAACACUUGUUUU-UCUUAUCCGUGAAAUUUUAUUGAUUUAGCUUUUUAAGAGGGCCCUGC .((((..((((...((((((.((.((.---((((((((....)))))))-).)).)).((.(((((.....))))).)))))))).))))..)))). ( -20.30) >DroSim_CAF1 54904 95 + 1 UCAGGCACCUUGGCUAAAAAAGAAAAAAAAAAAAACAAACACUUGUUUU-UCUUAUCCGUGAAAUUGUAUUGAUUUGGCUU-UUAAGAGGGCCCUGC .((((..((((...(((((...........((((((((....)))))))-).......((.(((((.....))))).))))-))).))))..)))). ( -18.60) >DroEre_CAF1 58079 82 + 1 UCAGGCACCUCGAG-AGA--------A--AAAAAACAAACUCCUAUUUU-UCUUAUCCGUGAAAUUGUAUUGAUUUGGCUU-UUAAGAGGGCCCG-- ...(((.((((..(-(((--------(--(((.............))))-))))....((.(((((.....))))).))..-....)))))))..-- ( -19.42) >DroYak_CAF1 54525 90 + 1 UCAGGCACCUCGAA-AAACAGGCACAU--AAAAAAUAAGCUCUUAGUUU-UCUUAUCCGUGAAAUUGUAUUGAUUUGGCUU-UUGAGAGGGCCCG-- ...(((.(((((((-((..((((....--.........)).))...)))-))......((.(((((.....))))).))..-....)))))))..-- ( -19.72) >consensus UCAGGCACCUCGGCUAAAAAAGAAAAU__AAAAAACAAACACUUGUUUU_UCUUAUCCGUGAAAUUGUAUUGAUUUGGCUU_UUAAGAGGGCCCUGC ...(((.((((....................(((((((....))))))).........((.(((((.....))))).)).......))))))).... (-15.74 = -15.94 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:26 2006