Locus 4680

Sequence ID 2L_DroMel_CAF1
Location 13,446,563 – 13,446,660
Length 97
Max. P 0.570902
window7397

overview

Window 7

Location 13,446,563 – 13,446,660
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 88.66
Mean single sequence MFE -33.17
Consensus MFE -28.62
Energy contribution -28.98
Covariance contribution 0.36
Combinations/Pair 1.19
Mean z-score -1.50
Structure conservation index 0.86
SVM decision value 0.07
SVM RNA-class probability 0.570902
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13446563 97 - 22407834
UAGAUAGAUGGGCGGUACGAUAACGGUGCCUGGGCGGACGCCGUGUCUAGCGGUUCUUGAGAAAUCGCAACAUUUUCUUUUCCGCCGCCCGAUUCUU
........((((((((((.......)))))..((((((.(((((.....)))))....((((((.........)))))).)))))))))))...... ( -35.60)
>DroSec_CAF1 53510 97 - 1
UAGAUAGAUGGGCGGUACGAUAACGGUGCCUGGGCGGACGCCGUGUCUAUCGGUUCUUGAGAAAUCGCAGCAUUUUCUUUUCCGCCGCCCGUUUCUU
.(((..((((((((((..((((((((((((.....)).))))))...))))((.....((((((.........))))))..))))))))))))))). ( -36.40)
>DroSim_CAF1 54690 97 - 1
UAGAUAGAUGGGCGGUACGAUAACGGUGCCUGGGCGGACGCCGUGUCUAGCGGUUCUUGAGAAAUCGCAGCAUUUUCUUUUCCGCCGCCCGAUUCUU
........((((((((((.......)))))..((((((.(((((.....)))))....((((((.........)))))).)))))))))))...... ( -35.60)
>DroEre_CAF1 57853 97 - 1
UAGAUAGAUGGGCGGUUCGAUAGCGGUGCCUGGGCAGACGCCGUGUCUAGCGGUUCUUGAGAAACCGCAGCAUUUUCUUUUCCGCCGCCCGAUUCUU
........((((((((..((((.(((((.((....)).)))))))))..(((((((....).))))))...............))))))))...... ( -35.90)
>DroWil_CAF1 86943 90 - 1
UAGAUAGAUGGGCGGUUCAACAACUAAACCUGGACAGACACAUUGUCUAACGAUUCUUGAGAAAACGCAACAUUUUCU-----GCCGCCUGAGUC--
.........(((((((..............(((((((.....)))))))..........((((((.......))))))-----))))))).....-- ( -19.60)
>DroYak_CAF1 54299 97 - 1
UAGAUAGAUGGGCGGUUCGAUAACGGUGCCUGGGCAGACGCCGUGUCUAGCGGUUCUCGAGAAACCGCAGCAUUUUCUUUUCCGCCGCCCGAUUCUC
........((((((((..((((.(((((.((....)).)))))))))..(((((((....).))))))...............))))))))...... ( -35.90)
>consensus
UAGAUAGAUGGGCGGUACGAUAACGGUGCCUGGGCAGACGCCGUGUCUAGCGGUUCUUGAGAAAUCGCAGCAUUUUCUUUUCCGCCGCCCGAUUCUU
........((((((((..((((.(((((.((....)).)))))))))..(((((((....).))))))...............))))))))...... (-28.62 = -28.98 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:25 2006