Locus 468

Sequence ID 2L_DroMel_CAF1
Location 1,366,978 – 1,367,079
Length 101
Max. P 0.874458
window752

overview

Window 2

Location 1,366,978 – 1,367,079
Length 101
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.44
Mean single sequence MFE -17.52
Consensus MFE -14.68
Energy contribution -14.73
Covariance contribution 0.06
Combinations/Pair 1.13
Mean z-score -1.60
Structure conservation index 0.84
SVM decision value 0.89
SVM RNA-class probability 0.874458
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1366978 101 + 22407834
CC--------CAGUUCCCAUACCAAUACCAAUCC-CACACCCGACCA--AAACUCACUUUUGGCUAUGAGAAAUCGCUCGUCAUUAUCGACGCCUGCGAAAAUCCGCCAGC---U--
..--------...(((.((((((((.........-............--..........)))).)))).))).((((.((((......))))...))))............---.-- ( -15.98)
>DroSec_CAF1 124000 101 + 1
CC--------CAAUUCCCAUACCAAUAGCAAUCC-CACACCCGACCA--AAACUCACUUUUGGCUAUGAGAAAUCGCUCGUCAUUAUCGACGCCUGCGAAAAUCCGCCAGC---U--
..--------...(((.((((((((.((......-............--.......)).)))).)))).))).((((.((((......))))...))))............---.-- ( -16.91)
>DroSim_CAF1 128420 101 + 1
CC--------CAGUUCUCAUACCAAUAGCAAUCC-CACACCCGACCA--AAACUCACUUUUGGCUAUGAGAAAUCGCUCGUCAUUAUCGACGCCUGCGAAAAUCCGCCAGC---U--
..--------...((((((((((((.((......-............--.......)).)))).)))))))).((((.((((......))))...))))............---.-- ( -21.61)
>DroEre_CAF1 142376 101 + 1
UC--------CAGUUCCAGUUCCAAUACCAAUCC-CCCGCCCGCCCA--AAACUCACUUUUGGCUAUGAGAAAUCGCUCGUCAUUAUCGACGCCUGCGAAAAUCCGCCAGC---U--
..--------........................-...((..(((((--(((.....))))))..........((((.((((......))))...))))......))..))---.-- ( -16.70)
>DroYak_CAF1 127491 110 + 1
UCCCCAGUCUCAGUCUCAGUUCCAAUACCAAUACUCCCCCCCGACCA--AAACUCACUUUUGGCUAUGAGAAAUCGCUCGUCAUUAUCGACGCCUGCGAAAAUCCGCCAGC---U--
.............(((((((......))..............(.(((--(((.....)))))))..)))))..((((.((((......))))...))))............---.-- ( -17.80)
>DroAna_CAF1 150174 88 + 1
-------------------CACCA---C-------CACCGCCGACCCCCAUCCACACACAAGGCUAUGAGAAAUCGCUCGUCAUUAUCGGCGCCUGCGAAAAUCCGCUACCCACCCA
-------------------.....---.-------...((((((.......((........))..(((((......))))).....))))))...(((......))).......... ( -16.10)
>consensus
CC________CAGUUCCCAUACCAAUACCAAUCC_CACACCCGACCA__AAACUCACUUUUGGCUAUGAGAAAUCGCUCGUCAUUAUCGACGCCUGCGAAAAUCCGCCAGC___U__
...........................................................(((((...((....((((.((((......))))...))))...)).)))))....... (-14.68 = -14.73 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:53 2006