Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,436,493 – 13,436,613 |
Length | 120 |
Max. P | 0.749338 |
Location | 13,436,493 – 13,436,613 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -44.29 |
Consensus MFE | -29.21 |
Energy contribution | -28.47 |
Covariance contribution | -0.74 |
Combinations/Pair | 1.40 |
Mean z-score | -1.87 |
Structure conservation index | 0.66 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13436493 120 + 22407834 AGCAAUUGCAACCGCACUUCUUCGGUUCCAUGACUAAUCUGGAGGAGGUGCGGCUGGCGUCCGCCACAAGUAGUGUGAAUCGCUCGAUGUUCAAGGGCACCAACAAGUUGCAGCUGAUCA ..((.((((((((((((((((((((((........))))..)))))))))))(.(((.((((...(((.(.((((.....)))))..)))....)))).))).)..))))))).)).... ( -41.10) >DroPse_CAF1 81383 120 + 1 ACGAGCUGCAGCCGCAUCUCUUCAGCUCCAUGAAGCAGCUGGUGGAGGUGCGCUUGUCCCAGGCCACUGGGCAUGUCAACAAGAGCAUGUUCAAGGGCAGCGAAAAGCUGCGGCUGAUCA ...((((((((((((((((((((((((.(.....).)))))).))))))))).((((.....(((..(((((((((........)))))))))..))).))))...)))))))))..... ( -54.60) >DroSim_CAF1 44573 120 + 1 AGCAAUUGCAGUCGCACUUCUUCGGUUCCAUGACUAAUCUGGAGGAGGUGCGCCUGGCGUCCGCCACAAGUAGUGUGAAUCGCACCAUGUUCAAGGGCACCAACAAGUUGCAGCUGAUCA .((((((..((.(((((((((((((((........))))..))))))))))).))((.((((.......((.(((((...))))).))......)))).))....))))))......... ( -37.82) >DroEre_CAF1 47928 120 + 1 AGCAAUUGCAGCCGCACUUUUUCGGUUCCAUGAAAAAUCUGGAGGAGGUGCGACUGGCGUCCGCAACCAGUAGUGUGAAUCGCACCAUGUUUAAGGGCACCAACAAGCUGCAGCUGAUCA ..((.((((((((((((((((((((((........))))..)))))))))))..(((.((((..((.((...(((((...)))))..)).))..)))).)))....))))))).)).... ( -41.40) >DroYak_CAF1 44270 120 + 1 AGCAAUUGCAACCGCACUUCUUCGGUUCCAUGAAUAAUCUGGAGGAGGUGCGCCUGGCGUCCGCCACAAGUAGUGUGAAUCGCAGCAUGUUCAAGGGCACCAACAAGUUGGCGCUGAUCA (((...(((...(((((((((((((((........))))..)))))))))))((((((....)))(((.((.(((.....))).)).)))...))))))((((....)))).)))..... ( -37.30) >DroPer_CAF1 55969 120 + 1 ACGAGUUGCAGCCGCAUCUCUUCAGCUCCAUGAAGCAGCUGGUGGAGGUGCGCUUGUCCCAGGCCACUGGGCAUGUCAACAAGAGCAUGUUCAAGGGCAGCGAAAAGCUGCGGCUGAUCA ..((....(((((((((((((((((((.(.....).)))))).)))))))).((((.(((((....)))))(((((........)))))..)))).(((((.....)))))))))).)). ( -53.50) >consensus AGCAAUUGCAGCCGCACUUCUUCGGUUCCAUGAAUAAUCUGGAGGAGGUGCGCCUGGCGUCCGCCACAAGUAGUGUGAAUCGCACCAUGUUCAAGGGCACCAACAAGCUGCAGCUGAUCA .....((((((((((((((((((((.............)))).)))))))))..(((.((((..(((.....)))(((((........))))).)))).)))....)))))))....... (-29.21 = -28.47 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:19 2006