Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,427,647 – 13,427,738 |
Length | 91 |
Max. P | 0.843192 |
Location | 13,427,647 – 13,427,738 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 87.74 |
Mean single sequence MFE | -41.03 |
Consensus MFE | -32.09 |
Energy contribution | -34.20 |
Covariance contribution | 2.11 |
Combinations/Pair | 1.04 |
Mean z-score | -3.05 |
Structure conservation index | 0.78 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13427647 91 + 22407834 UCGUCGGGUGCCAAGUG-GUGCCGAAUCCGGUCGAGUCCUGGCGUAUCCUGGCGAAAGCCAUAAGUGGUUGCGCCUCAUUUGGCAGCCCAUG .....((((((((((((-(.((((....))))........((((((.((((((....)))).....)).)))))))))))))))).)))... ( -43.90) >DroSec_CAF1 34890 91 + 1 UCGUCGGGUGCCAAGUG-GUGCCGAAUCCGGUCGAGUCCUGGCGUAUCCUGGCGAAAGCCAUACGUGGUUGCGCCUCAUUUGGCAGCCCAUG .....((((((((((((-(.((((....))))........((((((.((((((....)))).....)).)))))))))))))))).)))... ( -43.90) >DroSim_CAF1 35749 91 + 1 UCGUCGGGUGCCAAGUG-GUGCCGAAUCCGGUCGAGUCCUGGCGUAUCCUGGCGAAAGCCAUAAGUGGUUGCGCCUCAUUUGGCAGCCCAUG .....((((((((((((-(.((((....))))........((((((.((((((....)))).....)).)))))))))))))))).)))... ( -43.90) >DroEre_CAF1 39094 91 + 1 UCGUCGGGUGCCAAGUG-GUGCCGAGUCCGGUCGAGUCCUGGCGUAUCCUGGCAAAAGCCAUAAGUGGUUGCGCCUCAUUUGGCAGUCCGUG ....(((((((((((((-(.((((....))))........((((((.((((((....)))).....)).)))))))))))))))).)))).. ( -38.70) >DroYak_CAF1 35445 91 + 1 UCGUCGGGUGCCAAGUG-GUGCCGAAUCCGGUCGAGUCCUGGCGUAUCCUGGCGAAAGCCAUAAGUGGUUGCGCCCCAUUUGGCAGCCCAUG .....((((((((((((-(.((((....))))........((((((.((((((....)))).....)).)))))))))))))))).)))... ( -46.00) >DroAna_CAF1 92627 72 + 1 UCAGCGAGUGGAAAGUGAGUGCCGAAUCCG--------------------GGCGAAAGCCAUAAGUGGUUGCGCCUCAUUUGGCACUCCAUG ..............(.(((((((((((..(--------------------((((..(((((....))))).))))).))))))))))))... ( -29.80) >consensus UCGUCGGGUGCCAAGUG_GUGCCGAAUCCGGUCGAGUCCUGGCGUAUCCUGGCGAAAGCCAUAAGUGGUUGCGCCUCAUUUGGCAGCCCAUG .....((((((((((((...((((....))))........((((((.((((((....)))).....)).)))))).))))))))).)))... (-32.09 = -34.20 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:14 2006