Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,417,350 – 13,417,446 |
Length | 96 |
Max. P | 0.534384 |
Location | 13,417,350 – 13,417,446 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 86.76 |
Mean single sequence MFE | -19.86 |
Consensus MFE | -17.10 |
Energy contribution | -17.55 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.86 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534384 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13417350 96 - 22407834 GCAGUUAAAAGGCAGUUUUAUAUUCAUUACAAGUCAAGCUGCAGGGCCAAAACAGGAGGAACAACAA-CCGGCGGUAGAAACCACCAACAAAUGGCA ...........(((((((.((...........)).)))))))...((((........((........-))((.(((....))).))......)))). ( -20.20) >DroSec_CAF1 24833 97 - 1 GCAGUUAAAAGGCAGUUUUAUAUUCAUUACAAGUCAAGCUGCAGGGCCAAAACAACAGGAACAACAAGCCGGUGGGAGAAACCACCAACAAAUGGCA ...........(((((((.((...........)).)))))))...((((........((.........))(((((......)))))......)))). ( -23.40) >DroSim_CAF1 25584 97 - 1 GCAGUUAAAAGGCAGUUUUAUAUUCAUUACAAGUCAAGCUGCAGGGCCAAAACAACAGGAACAACAAGCCGGUGGGAGAAACCACCAACAAAUGGCA ...........(((((((.((...........)).)))))))...((((........((.........))(((((......)))))......)))). ( -23.40) >DroEre_CAF1 28572 95 - 1 GCAGUUAAAAGGCAGUUUUAUAUUCAUUACAAGUCAAGCUGCAGGGCCAAAACAACAGGAACAACAAA-CGGUGGGGG-GACCACCAACAAAUGGCA ...........(((((((.((...........)).)))))))...((((........(......)...-.(((((...-..)))))......)))). ( -22.00) >DroYak_CAF1 24956 73 - 1 GCAGUUAAAAGGCAGUUUUAUAUUCAUUACAAGUCCAGCUGCAGGGCCAAAACAACAGGAACAAC------------------------AAAUGGCA ((((((....(((...................))).))))))...((((................------------------------...)))). ( -10.32) >consensus GCAGUUAAAAGGCAGUUUUAUAUUCAUUACAAGUCAAGCUGCAGGGCCAAAACAACAGGAACAACAA_CCGGUGGGAGAAACCACCAACAAAUGGCA ((((((....(((...................))).))))))...((((........(......).....(((((......)))))......)))). (-17.10 = -17.55 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:13 2006