Locus 4670

Sequence ID 2L_DroMel_CAF1
Location 13,403,091 – 13,403,189
Length 98
Max. P 0.645053
window7382

overview

Window 2

Location 13,403,091 – 13,403,189
Length 98
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 84.01
Mean single sequence MFE -18.90
Consensus MFE -14.26
Energy contribution -15.08
Covariance contribution 0.81
Combinations/Pair 1.21
Mean z-score -1.60
Structure conservation index 0.75
SVM decision value 0.23
SVM RNA-class probability 0.645053
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13403091 98 - 22407834
CGUCGUCCUUACUUGUGAGUGGUUCCUUUGAGGGAUAAGUAUAUACAUAUGUAUAUAUCCCCAUAUUCCUUAUUUCUUAUCGCGCCCAUU-UUUGUUUC
.............((.(.(((((.....(((((((((.((((((((....)))))))).....)))))))))......))))).).))..-........ ( -19.10)
>DroSec_CAF1 15238 98 - 1
CGUCGUCCUUACUUGUGAGUGGUUC-UUUGAGGGGUAAGUAUAUACAUAUGUAUAUAUCCACAUAUUCCUUAUUCCUUAUCGCGCCCAUUGCUUGUUUC
..........((..(..(..(((.(-..((((((((((((((((((....)))))))...........)))))))))))..).)))..)..)..))... ( -22.60)
>DroSim_CAF1 15804 99 - 1
CGUCGUCCUUACUUGCGAGUGGUUCCUUUGAGGGGUAAGUAUAUACAUAUGUAUAUAUCCACAUAUUCCUUAUUCCUUAUCGCGCCCAUUGCUUGUUUC
..........((..((((..(((.(...((((((((((((((((((....)))))))...........)))))))))))..).)))..))))..))... ( -23.50)
>DroYak_CAF1 15152 79 - 1
CGUCGUCCUUACUUGUGAGUGGUUCC-------------UAUAUAUAUACAUAUAUAUCCCCAUAUUCC-------UUAUCGCACCCAUGGCUUGUUUC
.(((((.......(((((((((....-------------(((((((....)))))))...)))).....-------...)))))...)))))....... ( -10.40)
>consensus
CGUCGUCCUUACUUGUGAGUGGUUCCUUUGAGGGGUAAGUAUAUACAUAUGUAUAUAUCCACAUAUUCCUUAUUCCUUAUCGCGCCCAUUGCUUGUUUC
..........((..((((..(((.(...((((((((((((((((((....)))))))...........)))))))))))..).)))..))))..))... (-14.26 = -15.08 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:11 2006