Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,365,982 – 1,366,080 |
Length | 98 |
Max. P | 0.947018 |
Location | 1,365,982 – 1,366,080 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 76.52 |
Mean single sequence MFE | -25.66 |
Consensus MFE | -17.54 |
Energy contribution | -19.10 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.82 |
Structure conservation index | 0.68 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1365982 98 - 22407834 ACUGUGAAGGAUGGGGGAAACAGACGGCAAUGGCAGUUCCGUCUACAUCUCGCGCAGCUCCUCUAUACACUCAGAAAAAAAUUGCACUUCAUAUGGGC .(((((..(((((..(....)((((((.(((....))))))))).)))))..)))))............((((....................)))). ( -24.55) >DroSec_CAF1 123003 79 - 1 ACUGUGAAGGAUGGGGGAAACAGACGGCAAUGGCAGUUCCGUCUACAUCUCGCGCAGCUCCUCUAUACACUUAGAUAGA------------------- .(((((..(((((..(....)((((((.(((....))))))))).)))))..)))))....((((......))))....------------------- ( -25.80) >DroSim_CAF1 127399 92 - 1 ACUGUGAAGGAUGGGGGAAACAGACGGCAAUGGCAGUUCCGUCUACAUCUCGCGCAGCUCCUCUGUACACUUGGAAAAAA------CUUUACAUGUUC .(((((..(((((..(....)((((((.(((....))))))))).)))))..))))).(((...........))).....------............ ( -25.60) >DroEre_CAF1 141382 76 - 1 ACUGUGAAGGAUGG-GGAAACAGACGGCAAUGGCAGUUCCGUCU---------GCAGCUCCUCUCUGCACUCAGAAAAAU---GCAC---------AC ...(((.(((..((-((...(((((((.(((....)))))))))---------)...))))..))).)))..........---....---------.. ( -23.60) >DroYak_CAF1 126488 86 - 1 ACUGUGAAGGAUGGGGGAAACAGACGGCAAUGGCAGUUCCGUCUACAUCUCGCGCAGCUCCUCUCUACACUCAGAGAAAA---GCAC---------AC ..((((..(((((..(....)((((((.(((....))))))))).)))))..))))(((..(((((......)))))..)---))..---------.. ( -30.60) >DroAna_CAF1 149207 81 - 1 ACUGGAGAUGA--GGGGAAACAGACGGCAAUGCCAGUUCCGUCUACAUCUCUACCAUCUCUUUGAUACAUUCAGAAAAAA---AGA------------ ....((((((.--(((((...((((((.(((....)))))))))...)))))..))))))(((((.....))))).....---...------------ ( -23.80) >consensus ACUGUGAAGGAUGGGGGAAACAGACGGCAAUGGCAGUUCCGUCUACAUCUCGCGCAGCUCCUCUAUACACUCAGAAAAAA___GCAC__________C .(((((..(((((..(....)((((((.(((....))))))))).)))))..)))))......................................... (-17.54 = -19.10 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:52 2006