Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,396,592 – 13,396,707 |
Length | 115 |
Max. P | 0.540873 |
Location | 13,396,592 – 13,396,707 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 83.39 |
Mean single sequence MFE | -29.01 |
Consensus MFE | -16.53 |
Energy contribution | -16.17 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.26 |
Mean z-score | -2.04 |
Structure conservation index | 0.57 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13396592 115 + 22407834 CCGAAUCGCUCUCGAUCAUCCUGAGGAAUAUGGUCGCCUCGUCCUCAACCUUCGGCUCCAUCUCCUUCUUGGCCUGACCCUUCUUCUUCUUGGCCUCCAGCUUUUCCCUGGACUU ((((((((....)))......((((((....((...))...))))))...)))))...............((((.................))))(((((.......)))))... ( -24.73) >DroSec_CAF1 8728 115 + 1 CCGAGUCGCUCUCGAUCAUCCUGAGGAAAAUGGUCGCCUCGUCCUCAACCUUCGGCUCCAUCUCCUUUUUGGCCUGACCCUUCUUCUUCUUGGCCUCCAGCUUUUCCCUAGACUU .((((.....))))......(((.(((((((((..(((.............((((..(((.........))).))))..............)))..)))..)))))).))).... ( -24.13) >DroSim_CAF1 8978 115 + 1 CCGAGUCGCUCUCGAUCAUCCUGAGGAAAAUGGUCGCCUCGUCCUCAACCUUCGGCUCCAUCUCCUUUUUGGCCUGACCCUUCUUCUUCUUGGCCUCCAGCUUUUCCCUGGACUU .((((.....))))........(((((..((((..(((...............))).)))).)))))...((((.................))))(((((.......)))))... ( -26.19) >DroEre_CAF1 8742 115 + 1 CCACAUCGCUCUCGAUCAUCCUGAGGAAAAUGGUCGCCUCGUCCUCGGCCUUGGGCUCCAUCUCCCGCUUGGCCUGGCCCUUCUUCUUCUUGGCCUCCAGCUUUUCCCGGGACUU ....((((....))))..(((((.(((((((((..(((..(....)((((..(((((.............)))))))))............)))..)))..)))))))))))... ( -32.92) >DroAna_CAF1 53528 115 + 1 CCUCGUCGCCCUCGAUGAGCCGCAGAAGAAUAGUGGCUUCGUCUUCCUCUUUGGGCGCUGCCUCCUUCUUGGCCAAUAUCUUUUUCUUCUUGGCUUCCAAUUUGGCCAAGGUUUU ..((((((....))))))((((.(((((....(.(((..(((((........)))))..))).))))))))))..............((((((((........)))))))).... ( -37.10) >consensus CCGAGUCGCUCUCGAUCAUCCUGAGGAAAAUGGUCGCCUCGUCCUCAACCUUCGGCUCCAUCUCCUUCUUGGCCUGACCCUUCUUCUUCUUGGCCUCCAGCUUUUCCCUGGACUU ....((((....))))..(((...(((((((((..(((...............))).)))..........((((.................))))......))))))..)))... (-16.53 = -16.17 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:09 2006