Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,380,781 – 13,380,876 |
Length | 95 |
Max. P | 0.713611 |
Location | 13,380,781 – 13,380,876 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 79.02 |
Mean single sequence MFE | -15.70 |
Consensus MFE | -6.00 |
Energy contribution | -7.80 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.12 |
Mean z-score | -2.12 |
Structure conservation index | 0.38 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13380781 95 + 22407834 AUAUGUAUCUUAUCUUUAGAAUACGUGUCUCAAACACGAUUUCUCAAAUGAGAUUCCGCUUUCAAUAUUCCUAUAGAGAGCAUACAACAAUGGUU ...((((((((((.((.((((..(((((.....)))))..)))).))))))))....((((((.(((....))).)))))).))))......... ( -21.30) >DroSec_CAF1 1929 86 + 1 AUA----UCUUAUCAUUAGAAUACGUGUCUCAAACACGAUUUCUAAAAUGAGAUUCCGCUUUCAAUUUUUCAAUAUAGCGU-----ACAAUUGUU ..(----((((((..((((((..(((((.....)))))..)))))).)))))))..((((................)))).-----......... ( -16.89) >DroSim_CAF1 1790 86 + 1 AUA----UCUUAUCAUUAGAAUACGUGUCUCUAACACGAUUUCUAAAAUGAGAUUCCGCUUUCAAUUUUUCAAUAGAGCGU-----ACAAUUGUU ..(----((((((..((((((..(((((.....)))))..)))))).)))))))..((((((............)))))).-----......... ( -18.30) >DroEre_CAF1 1767 86 + 1 AUA----UCUUAUCUUUAGAAUACGUGUCUCAAACGCGAUAUUUAAUAUGAGCUUCAGCUUUCAAUUUUCCAAUUGAGCGU-----ACAAUUUUA ...----.(((((..(((((...(((((.....)))))...))))).))))).....((.(((((((....))))))).))-----......... ( -12.10) >DroYak_CAF1 1768 74 + 1 AUA----UCUUAUCUUUAGAAUACGUGUCUCAAACACGAUAUUU------------AGCCUUUAAUUUUCUAAUUGAGUGU-----ACAAUUUUA ...----...........((((((((((.....))))).)))))------------.((.(((((((....))))))).))-----......... ( -9.90) >consensus AUA____UCUUAUCUUUAGAAUACGUGUCUCAAACACGAUUUCUAAAAUGAGAUUCCGCUUUCAAUUUUCCAAUAGAGCGU_____ACAAUUGUU .......((((((...(((((..(((((.....)))))..)))))..)))))).......................................... ( -6.00 = -7.80 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:03 2006