Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,363,101 – 13,363,288 |
Length | 187 |
Max. P | 0.731285 |
Location | 13,363,101 – 13,363,221 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.89 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -24.81 |
Energy contribution | -25.62 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.03 |
Mean z-score | -1.67 |
Structure conservation index | 0.86 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13363101 120 + 22407834 AACUCUCUUAGCUGCAUAUUCCUCCCUUAAAUGCAGUUUUUUUUAGCUCAACUACCAAUUGAGUGAAUGUUAACGGAAUGUUAACUGCAAUCUCAAGACUCAAGCGCAGUUCUGAGUGAG ..(((.(((((((((................(((((((.......((((((.......)))))).((((((.....))))))))))))).((....)).......))))..))))).))) ( -26.00) >DroSec_CAF1 3953 119 + 1 AACUCUCUUAGCUGCAUAUUCCUCUCUUAAAUGCAGUUUU-UUAAGCUCAACUUCCAAUUGAGUGAAUGUUUACGGAAUGUUAACUGCAGUCUCAAGACUCAAGCGCAGUUCUGAGUGAG ..(((.((((((((((((((((....(((((........)-))))((((((.......))))))..........))))))).....((((((....))))...))))))..))))).))) ( -29.70) >DroSim_CAF1 3100 119 + 1 AACUCUCUUAGCUGCAUAUUCCUCUCUUAAAUGCAGUUUU-UUAAGCUCAACUUCCAAUUGAGUGAAUGUUUACGGAAUGUUAACUGCAGUCUCAAGACUCAAGCGCAGUUCUGAGUGAG ..(((.((((((((((((((((....(((((........)-))))((((((.......))))))..........))))))).....((((((....))))...))))))..))))).))) ( -29.70) >DroYak_CAF1 3264 119 + 1 AACUCUCUUAGUUGCACAUUCCUCCCUUAAGUGCAGUCUA-UUAAGCUCGACUACCAUUGGAGUGAAUGUUUACAGAAUGUUAACUGCAAUCUCUAGACUCAAGCGCAGUUCUGAGUGAG ..(((.(((((((((.(((((((((....((((.((((..-........))))..)))))))).))))(((((.(((.(((.....))).))).)))))....).))))..))))).))) ( -30.60) >consensus AACUCUCUUAGCUGCAUAUUCCUCCCUUAAAUGCAGUUUU_UUAAGCUCAACUACCAAUUGAGUGAAUGUUUACGGAAUGUUAACUGCAAUCUCAAGACUCAAGCGCAGUUCUGAGUGAG ..(((.(((((((((................(((((((.......((((((.......)))))).((((((.....)))))))))))))(((....)))......))))..))))).))) (-24.81 = -25.62 + 0.81)
Location | 13,363,181 – 13,363,288 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.95 |
Mean single sequence MFE | -27.45 |
Consensus MFE | -20.38 |
Energy contribution | -20.38 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.15 |
Mean z-score | -1.74 |
Structure conservation index | 0.74 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.731285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13363181 107 - 22407834 GAAU-------------CGUCAAAAUACUGCUCAUGACUCUUAUGAGCUUAGUCUGUUCCACUCAAAGCCACAUAUUUGACUCACUCAGAACUGCGCUUGAGUCUUGAGAUUGCAGUUAA ....-------------.........((((((((.(((((....((((.(((((((......(((((........)))))......))).)))).))))))))).)))....)))))... ( -26.80) >DroSec_CAF1 4032 117 - 1 GAAUCC---AAUCCACUCGUCAAAAUCCUGCUCAUUUCUCUUAUGAGCUUGGUCUGUUCCACUCAAAGCUACUUAUUUGACUCACUCAGAACUGCGCUUGAGUCUUGAGACUGCAGUUAA ......---.........((((((.....((((((.......)))))).(((......)))..............))))))........((((((.....((((....)))))))))).. ( -24.50) >DroSim_CAF1 3179 117 - 1 GAAUCC---AAUUCACUCGUCAAAAUUCUGCUCAUGGCUCUUAUGAGCUUGGUCUGUUCCACUCAAAGCUACUUAUUUGACUCACUCAGAACUGCGCUUGAGUCUUGAGACUGCAGUUAA ......---.........((((((.....(((...(((((....)))))(((......))).....)))......))))))........((((((.....((((....)))))))))).. ( -25.20) >DroYak_CAF1 3343 120 - 1 GACUGCAAAAAUCCACUUGUCAAAAUGCAGCUCAUUGCACCAAUGAGCUUAGUCGGUUCCACUCAAAGCUACCAGUUAGACUCACUCAGAACUGCGCUUGAGUCUAGAGAUUGCAGUUAA ((((((((.((((.((((((......)))((((((((...))))))))..))).))))...(((...((.....))(((((((((.((....)).)..))))))))))).)))))))).. ( -33.30) >consensus GAAUCC___AAUCCACUCGUCAAAAUACUGCUCAUGGCUCUUAUGAGCUUAGUCUGUUCCACUCAAAGCUACUUAUUUGACUCACUCAGAACUGCGCUUGAGUCUUGAGACUGCAGUUAA ..................((((((.....((((((((...)))))))).......(((........)))......))))))........((((((.....((((....)))))))))).. (-20.38 = -20.38 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:00 2006