| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,361,823 – 13,361,915 |
| Length | 92 |
| Max. P | 0.904606 |
| Location | 13,361,823 – 13,361,915 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 94.02 |
| Mean single sequence MFE | -24.50 |
| Consensus MFE | -21.70 |
| Energy contribution | -22.58 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.904606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13361823 92 + 22407834 UUAAAGAUACUUUGUGAAGUUGUCCCUUGGAAAGGGUAUCCACUCUAUGCCCAAUUACGCAGAUGUAUCUGGCACUUUCCUUAGUCUGCCGC ....((((((((((((.((((.(((...)))..((((((.......)))))))))).)))))).))))))((((((......)))..))).. ( -26.00) >DroSec_CAF1 2646 92 + 1 UUAAAGAUACUUUGUGAAGUUGUCCCCUGGAAAGGGUAUCCAUUCUAUGCCCAAUUACGCAGAUGUAUCUGGCACUUUCCUUAGUCUGCCGC ....((((((((((((.((((.(((...)))..((((((.......)))))))))).)))))).))))))((((((......)))..))).. ( -26.00) >DroSim_CAF1 1780 92 + 1 UUAAAGAUACUUUGUAAAGUUGUCCCCUGGAAAGGGUACCCAUUCUAUGCCCAAUUACGCAGAUGUAUCUGGCACUUUCCUUAGUCUGCCGC ....(((((((((((..(((((..(..(((((.((....)).))))).)..)))))..))))).))))))((((((......)))..))).. ( -24.30) >DroYak_CAF1 1950 91 + 1 UUAGAGAUGCUUUGUAAAGUUG-CCCAUGGAAAGGGUAUACAUUCUAUGCCCAAUUACACAGAUGUAUCUAGCACUUUCCUUAGUCUGCCGC ....(((((((((((..(((((-..(((((((.(......).)))))))..)))))..))))).))))))((.(((......)))))..... ( -21.70) >consensus UUAAAGAUACUUUGUAAAGUUGUCCCCUGGAAAGGGUAUCCAUUCUAUGCCCAAUUACGCAGAUGUAUCUGGCACUUUCCUUAGUCUGCCGC ....((((((((((((.((((.(((...)))..((((((.......)))))))))).)))))).))))))((((((......)))..))).. (-21.70 = -22.58 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:58 2006