Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,361,324 – 13,361,440 |
Length | 116 |
Max. P | 0.527499 |
Location | 13,361,324 – 13,361,440 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.06 |
Mean single sequence MFE | -41.22 |
Consensus MFE | -24.31 |
Energy contribution | -25.00 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.24 |
Mean z-score | -1.63 |
Structure conservation index | 0.59 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527499 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13361324 116 - 22407834 UAGUGCCCUCC----AUAGCGGCAUCCAAAGUCUGCGGACCGGAAAAGCAUUGCGUUCCCUACGAGCAGUGCAACGAGGGCUUAAUGGUGGACGGAAAAUUCUAUCCGGAUCGCAGCAGA ..(((((((..----..)).))))).....(.((((((.(((((...(((((((...........)))))))..((...(((....)))...))..........))))).)))))))... ( -37.20) >DroVir_CAF1 975 117 - 1 ---GGCCGUGCGGAAACAUCCGGCUACAAAUCGUGUGCACCAGACAAGAACUGUGUGUCCUACGAUUUGUGCAAUGAGGGUAUUUUUGUGGAUGGCCACUUUUAUCCCGACCGCAGUCGC ---(((((((((((((.((((.((.((((((((((..((((((.......))).)))..).))))))))))).....)))).)))))))..))))))..........((((....)))). ( -43.30) >DroSec_CAF1 2137 116 - 1 UAGUGCCGUGC----ACAUCGGCAUUCAAGGUCUGCGGACCGGAAAAGCAUUGCGUUCCAUAUGAGCAGUGCAACGAGGGCUUGAUGGUGGACGGAAAAUUCUAUCCGGAUCGCAGUAGA .(((((((...----....)))))))......((((((.(((((...(((((((...........)))))))....((((.((..((.....))..)).)))).))))).)))))).... ( -39.20) >DroSim_CAF1 1257 116 - 1 UAGUGCCCUCA----UUAGGGGCAUUCAAGGCCUGCGGACCGGAAAAGCAUUGUGUUCCCUACGAGCAGUGCAACGAGGGCUUGAUGGUGGACGGAAAAUUCUAUCCGGAUCGCAGUAGA .((((((((..----...))))))))......((((((.(((((......((.(((((((..(((((.(.....)....)))))..)).))))).)).......))))).)))))).... ( -41.12) >DroEre_CAF1 10557 116 - 1 UACUGCCCUCG----AUAUCGGCAUUCAAGGGCUGCGGGCCGGAAAAGCAUUGCGUUCCCUACGAGCAGUGCAACGAGGGCAUACUGGUGGACGGAAAAUUCUAUCCGGAUCGCAGUAGA ...((((((((----...(((((...((.....))...)))))....(((((((...........)))))))..))))))))(((((.(((.((((........))))..)))))))).. ( -44.90) >DroYak_CAF1 1347 116 - 1 UAGUGCCCUCG----AUAUUGGCUUUCAAGAGCUGCGGACCGGAAAAGCACUGCGUUCCAUACGAGCAGUGCAACGAGGGCUUGCUGGUGGACGGAAAGUUCUAUCAGGAUCGCAGUAGA ..(((((((((----.....(((((....))))).............(((((((...........)))))))..)))))))...(((((((((.....).))))))))....))...... ( -41.60) >consensus UAGUGCCCUCC____AUAUCGGCAUUCAAGGCCUGCGGACCGGAAAAGCAUUGCGUUCCCUACGAGCAGUGCAACGAGGGCUUGAUGGUGGACGGAAAAUUCUAUCCGGAUCGCAGUAGA ...((((.............))))........(((((..(((((...(((((((...........)))))))................((((........)))))))))..))))).... (-24.31 = -25.00 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:57 2006