Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,354,669 – 13,354,774 |
Length | 105 |
Max. P | 0.915479 |
Location | 13,354,669 – 13,354,774 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -36.12 |
Consensus MFE | -20.92 |
Energy contribution | -21.96 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.14 |
Mean z-score | -2.87 |
Structure conservation index | 0.58 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915479 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13354669 105 + 22407834 UGGAGAG------CGGCUCUUUUCAGAGAGCGGAAAGGAAAAGCCGUGAGCAAACGGAGAUUGCGCUCUCAGGACACUUUUCCUUGCUGGCCAAUUGGAAAGGAAAAAUCA ..(((((------((((((((....))))))............((((......))))......))))))).......((((((((.....((....)).)))))))).... ( -35.40) >DroSec_CAF1 66839 105 + 1 UGGAGAG------CGGCUCUUUUCAGAGAGCGGAAAGGAAAAGCCGUGAGCAAACGGAGAUUGCGCUCUCAGGACACUUUUCCUUGCUGGCCAAUUGGAAAGGAAAAAUCA ..(((((------((((((((....))))))............((((......))))......))))))).......((((((((.....((....)).)))))))).... ( -35.40) >DroSim_CAF1 69594 105 + 1 UGGAGAG------CGGCUCUUUUCAGAGAGCGGAAAGGAAAAGCCGUGAGCAAACGGAGAUUGCGCUCUCAGGACACUUUUCCUUGCUGGCCAAUUGGAAAGGAAAAAUCA ..(((((------((((((((....))))))............((((......))))......))))))).......((((((((.....((....)).)))))))).... ( -35.40) >DroYak_CAF1 68614 105 + 1 UGGAGAG------CGGCUCCUUUCAGAGAGCGAAAAGGAAAAGCCGUGAGCAAACGGAGAUUGCGCUCUCAGGCCACUUUUCCUUGCUGGCCAAUUGGAAAGGAAAAAUCA ....((.------....(((((((.(((((((...((......((((......))))...)).))))))).((((((........).))))).....)))))))....)). ( -36.60) >DroAna_CAF1 74351 110 + 1 GAGAGAGAGAGAGCAGGG-AUUUGAGAAAACGGCUCGAAAGAGCGCAGGAGAGAGUACUAUCUCUCUCGCAGGACACUUUUCCUUGCUGGCCAAUUAUUGAGGAAAAAUCA ......(.(..(((((((-(...(((......((((....))))((..((((((......))))))..))......))).))))))))..))................... ( -37.80) >consensus UGGAGAG______CGGCUCUUUUCAGAGAGCGGAAAGGAAAAGCCGUGAGCAAACGGAGAUUGCGCUCUCAGGACACUUUUCCUUGCUGGCCAAUUGGAAAGGAAAAAUCA ..(((((........((((((....)))))).....(.((...((((......))))...)).).))))).......((((((((.((........)).)))))))).... (-20.92 = -21.96 + 1.04)
Location | 13,354,669 – 13,354,774 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -30.07 |
Consensus MFE | -16.96 |
Energy contribution | -17.36 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.28 |
Mean z-score | -2.28 |
Structure conservation index | 0.56 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13354669 105 - 22407834 UGAUUUUUCCUUUCCAAUUGGCCAGCAAGGAAAAGUGUCCUGAGAGCGCAAUCUCCGUUUGCUCACGGCUUUUCCUUUCCGCUCUCUGAAAAGAGCCG------CUCUCCA ..((((((((((.((....)).....)))))))))).....((((((((((.......))))....(((((((...(((........)))))))))))------))))).. ( -30.40) >DroSec_CAF1 66839 105 - 1 UGAUUUUUCCUUUCCAAUUGGCCAGCAAGGAAAAGUGUCCUGAGAGCGCAAUCUCCGUUUGCUCACGGCUUUUCCUUUCCGCUCUCUGAAAAGAGCCG------CUCUCCA ..((((((((((.((....)).....)))))))))).....((((((((((.......))))....(((((((...(((........)))))))))))------))))).. ( -30.40) >DroSim_CAF1 69594 105 - 1 UGAUUUUUCCUUUCCAAUUGGCCAGCAAGGAAAAGUGUCCUGAGAGCGCAAUCUCCGUUUGCUCACGGCUUUUCCUUUCCGCUCUCUGAAAAGAGCCG------CUCUCCA ..((((((((((.((....)).....)))))))))).....((((((((((.......))))....(((((((...(((........)))))))))))------))))).. ( -30.40) >DroYak_CAF1 68614 105 - 1 UGAUUUUUCCUUUCCAAUUGGCCAGCAAGGAAAAGUGGCCUGAGAGCGCAAUCUCCGUUUGCUCACGGCUUUUCCUUUUCGCUCUCUGAAAGGAGCCG------CUCUCCA ..((((((((((.((....)).....)))))))))).....((((((((((.......))))....(((...(((((((........)))))))))))------))))).. ( -32.80) >DroAna_CAF1 74351 110 - 1 UGAUUUUUCCUCAAUAAUUGGCCAGCAAGGAAAAGUGUCCUGCGAGAGAGAUAGUACUCUCUCCUGCGCUCUUUCGAGCCGUUUUCUCAAAU-CCCUGCUCUCUCUCUCUC ........................(((.(((......))))))((((((((.((((.........((((((....))).)))..........-...)))).)))))))).. ( -26.35) >consensus UGAUUUUUCCUUUCCAAUUGGCCAGCAAGGAAAAGUGUCCUGAGAGCGCAAUCUCCGUUUGCUCACGGCUUUUCCUUUCCGCUCUCUGAAAAGAGCCG______CUCUCCA ...................(((.(((((((((((((.....((((......))))((........))))))))))))...))).(((....)))))).............. (-16.96 = -17.36 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:56 2006