Locus 4658

Sequence ID 2L_DroMel_CAF1
Location 13,347,193 – 13,347,283
Length 90
Max. P 0.880667
window7366

overview

Window 6

Location 13,347,193 – 13,347,283
Length 90
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 74.75
Mean single sequence MFE -25.00
Consensus MFE -8.77
Energy contribution -8.77
Covariance contribution -0.00
Combinations/Pair 1.29
Mean z-score -2.00
Structure conservation index 0.35
SVM decision value 0.91
SVM RNA-class probability 0.880667
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13347193 90 + 22407834
AAAUUAAAGCAGAGUUUAACCUUUGUCCUUGUGC--AAAUG-GCAGGGUGGGUCUAUAACCACCUGCCUGCGAUUGUGUGA--GACCCGCAUAAA
........((((((......)))))).....(((--(...(-(((((.(((........))))))))))))).(((((((.--....))))))). ( -28.40)
>DroPse_CAF1 76489 88 + 1
AAAUUAAAGCAAAGUUUAACCUUUGCCUUUGUCAACGGAUGUA-UGGGUGUGUUCAUAC--AUA----AAGGAAUGUGUGCUGAACCCGCAUCAA
....((((((((((......))))).)))))......(((((.-.((((.....(((((--((.----.....)))))))....))))))))).. ( -24.20)
>DroEre_CAF1 60508 85 + 1
AAAUUAAAGCAGAGUUUAACCUUUGUCCUUGUGC--AAAUG--CACGAUGGGGCUAUAGCCACC----UGCGAUUGUGUGA--GGCCCGCAUAAA
........((((.((...........((((((((--....)--))))).))(((....))))))----)))..(((((((.--....))))))). ( -26.40)
>DroYak_CAF1 60146 85 + 1
AAAUUAAAGCUGAGUUUAACCUUUGUCCUUGUGC--AAAUG--CAGGGUGGGAUUAUAACCACC----UGCGAUUGUGUGU--GGCCCGCAUGAA
........((.(((......)))...((.((..(--((.((--((((.(((........)))))----)))).)))..)).--))...))..... ( -21.10)
>DroPer_CAF1 76483 88 + 1
AAAUUAAAGCAAAGUUUAACCUUUGCCUUUGUCAACGGAUGUG-UGGGUGUGUUCAUAC--AUA----AAGGAAUGUGUGCUGAACCCGCAUCAA
....((((((((((......))))).))))).........(((-(((((.....(((((--((.----.....)))))))....))))))))... ( -24.90)
>consensus
AAAUUAAAGCAGAGUUUAACCUUUGUCCUUGUGC__AAAUG__CAGGGUGGGUUUAUAACCACC____UGCGAUUGUGUGA__GACCCGCAUAAA
........((((((......)))))).....................(((((((((((..................))))...)))))))..... ( -8.77 =  -8.77 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:54 2006