Locus 4654

Sequence ID 2L_DroMel_CAF1
Location 13,336,897 – 13,336,998
Length 101
Max. P 0.500000
window7357

overview

Window 7

Location 13,336,897 – 13,336,998
Length 101
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 82.23
Mean single sequence MFE -26.07
Consensus MFE -16.78
Energy contribution -16.75
Covariance contribution -0.03
Combinations/Pair 1.14
Mean z-score -1.60
Structure conservation index 0.64
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13336897 101 + 22407834
UGGUUUUGUUGGCAUUUCAUUUAAGCGCAGCAGCAUAUUUUGUUGCCAUUGUUU-GCAAUGCGUC-CGCAUCCGCAUUCAGUUCGUGGAACA------ACCAUACCAUC
((((...(((((((((.((..(((..(((((((......)))))))..)))..)-).)))))...-....(((((.........))))).))------))...)))).. ( -29.00)
>DroPse_CAF1 64764 92 + 1
UGGUUUAGCUGGCAUUUCAUUUAAGCGCAGCAGCAUAUUUUGUUGCCAUUGUUU-GCAAUGCGUC-CGCAUCCGCAUUCAGUUCCA----C-----------UUCCACU
(((...((((((((((.((..(((..(((((((......)))))))..)))..)-).)))))...-.((....))...))))))))----.-----------....... ( -22.70)
>DroEre_CAF1 50421 101 + 1
UGGUUUUGUUGGCAUUUCAUUUAAGCGCAGCAGCAUAUUUUGUUGCCAUUGUUU-GCAGUGCGUC-CGCAUCCGCAUUCAGUUCGGGGAGCA------CCCAUACCAUC
((((..((...((.(..(......(.(((((((......))))))))((((..(-((.((((...-.))))..)))..))))..)..).)).------..)).)))).. ( -27.20)
>DroWil_CAF1 87088 108 + 1
UGGUU-UGUUGGCAUUUCAUUUAAGUGCAGUAGCAUAUUUUGUUGCCAUUGUUUGGCAAUGCGUCCCGCAUCCGCAUUCAGUUCGUUGGGUUUGUUUUUCGCCACCAGC
((((.-(((((((((((.....))))))..)))))......(((((((.....)))))))(((....(((..(.((..........)).)..)))....))).)))).. ( -25.40)
>DroAna_CAF1 55627 95 + 1
UGGUUUUGUUGGCAUUUCAUUUAAGCACAGCAGCAUAUUUUGCUGCCAUUGUUU-GCAAUGCGUC-CGCAUCCGCAUUCGCAUUUGG-U-----------CCUGCCAGU
........((((((..(((...(((((..((((((.....))))))...)))))-((((((((..-......)))))).))...)))-.-----------..)))))). ( -28.90)
>DroPer_CAF1 64029 92 + 1
UGGUUUUGCUGGCAUUUCAUUUAAGCGCAGCAGCAUAUUUUGUUGCCAUUGUUU-GCAAUGCGUC-CGCAUCCGCAUUCAGUUCCA----C-----------UUCCACA
(((....(((((((((.((..(((..(((((((......)))))))..)))..)-).)))))...-.((....))...)))).)))----.-----------....... ( -23.20)
>consensus
UGGUUUUGUUGGCAUUUCAUUUAAGCGCAGCAGCAUAUUUUGUUGCCAUUGUUU_GCAAUGCGUC_CGCAUCCGCAUUCAGUUCGAG___C_________C_UACCACC
((((.....(((((...((..((.((......)).))...)).))))).......((.(((((...)))))..))............................)))).. (-16.78 = -16.75 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:46 2006