Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,330,436 – 13,330,567 |
Length | 131 |
Max. P | 0.952357 |
Location | 13,330,436 – 13,330,546 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 86.00 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -19.91 |
Energy contribution | -21.19 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.04 |
Mean z-score | -2.10 |
Structure conservation index | 0.79 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921272 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13330436 110 - 22407834 ACCCAGCUGCCGAGGGAAUUAGGAGCACCCUUUCCCGAUCCACUUUUUCUGCGCCUUUUCCUCGGCUGAAUUUUAAAAUUAUCACUUUCGCCCAUCGCACAGCGUCGACU .....(((((((((((((..(((.(((......................))).))))))))))))).......................((.....))..)))....... ( -25.85) >DroSec_CAF1 43029 110 - 1 ACCCAGCAGCCGAGGGAAUUAGGAGCACCCUUUCCCGAUCCACUUUCCCUGCGCCUUUUCCUCGACUGAAUUUUAAAAUUAUCAUUUUCACCCAUCGCACAGCGUUGACU ......(((.((((((((..(((.(((......................))).))))))))))).)))........................((.(((...))).))... ( -21.65) >DroSim_CAF1 42330 107 - 1 ACCCAGCAGCCGAGGGAAUUAGGAGCACCCUUUCCCGAUUCACUUUCCCUGCGCCUUUUCCUCGGCUGAAUUUUAAAAUUA---CUUUCGCCCAUCGCACAGCGUCGACU ......((((((((((((..(((.(((......................))).))))))))))))))).............---...(((.....(((...))).))).. ( -27.95) >DroEre_CAF1 43912 110 - 1 ACCCAGCAGCCGAGGGAAUUAGGAGCACCCUUUCCCAAUCCACUUUCCCUGCGCCUUUUCCUCGGCUGAAUUUUAAAAUUAUCACUUUCGCCCAUCGCACAUCGUCGACU ......((((((((((((..(((.(((......................))).))))))))))))))).....................((.....))............ ( -26.85) >DroYak_CAF1 42953 85 - 1 ACCCAGCAGCCGAGGGAAUUAGGAGCACCCU-------------------------UUUCCUCGGCUGAAUUUUAAAAUUAUCACUUUCGCCCACCGCACAUCGUCGACU ......((((((((((((..(((.....)))-------------------------)))))))))))).....................((.....))............ ( -24.30) >consensus ACCCAGCAGCCGAGGGAAUUAGGAGCACCCUUUCCCGAUCCACUUUCCCUGCGCCUUUUCCUCGGCUGAAUUUUAAAAUUAUCACUUUCGCCCAUCGCACAGCGUCGACU ......((((((((((((..(((.(((......................))).)))))))))))))))...................(((.....((.....)).))).. (-19.91 = -21.19 + 1.28)
Location | 13,330,475 – 13,330,567 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.26 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -23.17 |
Energy contribution | -24.53 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.14 |
Mean z-score | -2.20 |
Structure conservation index | 0.79 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13330475 92 - 22407834 UCAGGGGCAUGUGCACCCAGCACCCAGCUGCCGAGGGAAUUAGGAGCACCCUUUCCCGAUCCACUUUUUCUGCGCCUUU--UCCUCGGCUGAAU-- ((((((((....)).)))(((.....)))((((((((((..(((.(((......................))).)))))--)))))))))))..-- ( -31.55) >DroPse_CAF1 56647 85 - 1 UCAGGGGCAUGUGCACCCAACG------AACAGAGGAUGUUAGAAAUGCCUUUUCC--AUUCCCAAUCUCCGCCCCUGUUUUACU---CUCAAUUU .(((((((.(((.......)))------......(((.(((.(.((((.......)--))).).))).)))))))))).......---........ ( -20.20) >DroSec_CAF1 43068 92 - 1 UCAGGGGCAUGUGCACCCAGCACCCAGCAGCCGAGGGAAUUAGGAGCACCCUUUCCCGAUCCACUUUCCCUGCGCCUUU--UCCUCGACUGAAU-- ...(((((....)).))).........(((.((((((((..(((.(((......................))).)))))--)))))).)))...-- ( -26.65) >DroSim_CAF1 42366 92 - 1 UCAGGGGCAUGUGCACCCAGCACCCAGCAGCCGAGGGAAUUAGGAGCACCCUUUCCCGAUUCACUUUCCCUGCGCCUUU--UCCUCGGCUGAAU-- ...(((((....)).))).........((((((((((((..(((.(((......................))).)))))--))))))))))...-- ( -33.75) >DroEre_CAF1 43951 92 - 1 UCAGGGGCAUGUGCACCCAGCACCCAGCAGCCGAGGGAAUUAGGAGCACCCUUUCCCAAUCCACUUUCCCUGCGCCUUU--UCCUCGGCUGAAU-- ...(((((....)).))).........((((((((((((..(((.(((......................))).)))))--))))))))))...-- ( -33.75) >consensus UCAGGGGCAUGUGCACCCAGCACCCAGCAGCCGAGGGAAUUAGGAGCACCCUUUCCCGAUCCACUUUCCCUGCGCCUUU__UCCUCGGCUGAAU__ ...(((((....)).))).........((((((((((....(((.(((......................))).)))....))))))))))..... (-23.17 = -24.53 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:37 2006