Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,360,155 – 1,360,260 |
Length | 105 |
Max. P | 0.825040 |
Location | 1,360,155 – 1,360,260 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 79.83 |
Mean single sequence MFE | -36.92 |
Consensus MFE | -23.81 |
Energy contribution | -24.57 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.31 |
Mean z-score | -1.89 |
Structure conservation index | 0.65 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.825040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1360155 105 + 22407834 UUCAAUGGCAUUUGGCACCGUGGUAGACACGAAGUCAUCCACAUCGAGGCCAUCCUCUCCGGCCAGCCCAGUGCCAUUACCAUCCAACCGGGGACAGUUCUUCUG ...(((((((((.(((...((((..(((.....)))..)))).....((((.........)))).))).)))))))))...........(((((....))))).. ( -36.50) >DroSec_CAF1 117278 105 + 1 UUCGAUGGCAUUGGGCACAGUGGUGGACACGAAGUCAUCCACAUCGAGGCCAUCCUCUCCGGCCAGCCCGGUACCAUUACCAUCCAACCGGGGGCAGUUCUUCUG ...(((((.(((((((...((((..(((.....)))..)))).....((((.........)))).))))))).))))).((.(((....)))))(((.....))) ( -37.40) >DroSim_CAF1 121674 105 + 1 UUCGAUGGCAUUGGGCACAGUGGUGGACACGAAGUCAUCCACAUCGAGGCCAUCCUCUCCGGCCAGCCCGGUGCCAUUACCAUCCAACCGGGGGCAGUUCUUCUG ...(((((((((((((...((((..(((.....)))..)))).....((((.........)))).))))))))))))).((.(((....)))))(((.....))) ( -44.00) >DroEre_CAF1 135729 87 + 1 UUCGAUGGCAUUCGGCACGGUGGAGGACACAAAGUCAUCCACAUCGA------------------GCCCAGUGGCAUUGCCAUCCAGCCCGGGACAGUUCUUCUG ...(((((((.((((....(((((.(((.....))).))))).))))------------------(((....)))..))))))).....(((((......))))) ( -29.70) >DroYak_CAF1 120582 105 + 1 CUCGAUGGCAUUCGGCACCGUGGUGGACACAAAGUCAUCCACACCGAGGCCAUCUUCCCCAGCCAGCCCAGUGCCAUUGCCAUCCAAGCGGGGACAGUUCCUCUG ...(((((((...(((((.((((..(((.....)))..)))).....(((...........)))......)))))..))))))).....(((((....))))).. ( -38.20) >DroAna_CAF1 143587 102 + 1 CUCGAUGGCAUUUGGCACCACAGUGGUGACGAAGUCAUCCACAUCCG---UAUCGUCUCCGAUCAGUUCAGUGCUGUUGCCAUCCAGCUGGGGGCACUUGCUCUG ((.(((((((..((((((....((((((((...)))).))))....(---.((((....)))))......)))))).))))))).))...(((((....))))). ( -35.70) >consensus UUCGAUGGCAUUCGGCACCGUGGUGGACACGAAGUCAUCCACAUCGAGGCCAUCCUCUCCGGCCAGCCCAGUGCCAUUACCAUCCAACCGGGGACAGUUCUUCUG ...(((((((((.(((...((((..(((.....)))..)))).....((((.........)))).))).)))))))))....(((......)))........... (-23.81 = -24.57 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:50 2006