Locus 4649

Sequence ID 2L_DroMel_CAF1
Location 13,328,330 – 13,328,427
Length 97
Max. P 0.512755
window7345

overview

Window 5

Location 13,328,330 – 13,328,427
Length 97
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 73.80
Mean single sequence MFE -30.68
Consensus MFE -17.55
Energy contribution -20.02
Covariance contribution 2.47
Combinations/Pair 1.21
Mean z-score -1.37
Structure conservation index 0.57
SVM decision value -0.04
SVM RNA-class probability 0.512755
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13328330 97 - 22407834
UUCCUAGCAGAGGUAACAGCGGCUGCAUUGCUG-------CACAUUGCACGUUGCAUCCAUUUAUGG--UUUGUUCUUUGGGCGAUGCACACGCACUUGCCACUGC
......((((.(((((..(((..((((((((((-------(.....)).((..(((.(((....)))--..)))....)))))))))))..)))..))))).)))) ( -34.90)
>DroSec_CAF1 40875 97 - 1
UUCCUAGCAGAGGUUGCAACGGCUGCAUUGCUG-------CACGUUGCAGGUUGCAUCCAUUUAUGG--UUUGUUCUUUGGGCGAUGCACACGCACUUGCCACUGC
......((((((.((((((((((.((...)).)-------).)))))))).))(((.(((....)))--..)))......((((((((....))).))))).)))) ( -32.20)
>DroSim_CAF1 40192 97 - 1
UUCCUAGCAGAGGUUGCAACGGCUGCAUUGCUG-------CACGUUGCAGGUUGCAUCCAUUUAUGG--UUUGUUCUUUGGGCGAUGCACACGCACUUGCCACUGC
......((((((.((((((((((.((...)).)-------).)))))))).))(((.(((....)))--..)))......((((((((....))).))))).)))) ( -32.20)
>DroEre_CAF1 41841 97 - 1
UUCCUAGCAGAGGCUGCGGCGACUGCAUUGCUG-------CACGUUGCACAUUGCAUCCAUUUAUGG--UUAGUUCUUUGGGCGAUGCACACGCACUUGCCACAUC
...(((((.((((.(((((((((((((....))-------)).)))))....)))).)).))....)--)))).....((((((((((....))).))))).)).. ( -28.00)
>DroYak_CAF1 40832 100 - 1
UUCCUAGCAGAGGCUGCGGUGGCUGCAUUGCAGCACGUUGCACGUUGCACGUUGCAUUCAUUUAUGG--UUGGUUCUUUGGGCGAUGCACACGCACUUGCCA----
.......((((((((((((((....)))))))))....((((((.....)).))))...........--......)))))((((((((....))).))))).---- ( -33.10)
>DroPer_CAF1 54029 78 - 1
UUUGCCGCAG--GCCUCGGCCGCU--------------------------AUUGCACUCGUUUAUUGUGUUAAUUCUGCGGCAAGCCCUCCCGCACACGUUGCUGC
((((((((((--((....)))...--------------------------...((((.........))))......))))))))).......(((.....)))... ( -23.70)
>consensus
UUCCUAGCAGAGGCUGCAGCGGCUGCAUUGCUG_______CACGUUGCACGUUGCAUCCAUUUAUGG__UUUGUUCUUUGGGCGAUGCACACGCACUUGCCACUGC
......((((.(((....(((..((((((((..............(((.....))).(((..................)))))))))))..)))....))).)))) (-17.55 = -20.02 +   2.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:35 2006