Locus 4648

Sequence ID 2L_DroMel_CAF1
Location 13,318,788 – 13,318,879
Length 91
Max. P 0.911296
window7344

overview

Window 4

Location 13,318,788 – 13,318,879
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 77.80
Mean single sequence MFE -18.15
Consensus MFE -13.94
Energy contribution -14.13
Covariance contribution 0.19
Combinations/Pair 1.06
Mean z-score -1.56
Structure conservation index 0.77
SVM decision value 1.08
SVM RNA-class probability 0.911296
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13318788 91 + 22407834
UAUAUGUAU--AUCCCCCAGUUUGUCUGCCAAACAAUUGGCAAAUAUUUAUAGUCUAAUUGUGAGUGCGAUUGAGAUUGUACAAAUACGUUUU---
...((((((--...........(((.((((((....)))))).)))..((((((((((((((....)))))).))))))))...))))))...--- ( -20.80)
>DroPse_CAF1 41127 75 + 1
----------G-U-----AAACUGCCAGCCAAACAAUCGGCAAAUAUUUAUAGUCUAAUUGUGAGUGCGAUUGAGAUGGUAUAC--UCGUACA---
----------(-(-----(...((((.(((........)))...........((((((((((....)))))).))))))))...--...))).--- ( -15.60)
>DroSim_CAF1 31806 92 + 1
AAUAUAUAUAU-UCCCCCAGUUUGUCUGCCAAACAAUUGGCAAAUAUUUAUAGUCUAAUUGUGAGUGCGAUUGAGAUUGUACAAAUACGUUCU---
...........-.......(((((..((((((....))))))......((((((((((((((....)))))).))))))))))))).......--- ( -19.40)
>DroEre_CAF1 32787 79 + 1
--------------CCCCAGUUUGUCUGCCAAACAACUGGCAAAUAUUUAUAGUCUAAUUGUGAGUACGAUUGAGAUUGUACAAAUACGUUCU---
--------------.....(((((..(((((......)))))......((((((((((((((....)))))).))))))))))))).......--- ( -18.10)
>DroYak_CAF1 31577 82 + 1
--------------ACCCAGUUUGUCUGCCAAACAAUUGGCAAAUAUUUAUAGUCUAAUUGUGAGUGCGAUUGAGAUUGUACAAAUACGCUCUCUC
--------------.....(((((..((((((....))))))......((((((((((((((....)))))).))))))))))))).......... ( -19.40)
>DroPer_CAF1 40775 75 + 1
----------G-U-----AAACUGCCAGCCAAACAAUCGGCAAAUAUUUAUAGUCUAAUUGUGAGUGCGAUUGAGAUGGUAUAC--UCGUACA---
----------(-(-----(...((((.(((........)))...........((((((((((....)))))).))))))))...--...))).--- ( -15.60)
>consensus
____________U_CCCCAGUUUGUCUGCCAAACAAUUGGCAAAUAUUUAUAGUCUAAUUGUGAGUGCGAUUGAGAUUGUACAAAUACGUUCU___
...........................(((........))).......((((((((((((((....)))))).))))))))............... (-13.94 = -14.13 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:34 2006