Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,300,675 – 13,300,773 |
Length | 98 |
Max. P | 0.597074 |
Location | 13,300,675 – 13,300,773 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -19.10 |
Energy contribution | -18.88 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.20 |
Mean z-score | -1.35 |
Structure conservation index | 0.69 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13300675 98 + 22407834 GUUUCUCGGCAUUAAUCAUGACUGAGCUCAUCAUGGUGGCUCUCACCGUGCGUACUUGGCAUAGGUGAGUUUUGUAAACUGCAUUUAAUCUUUAUUGU ........(((.....((.(((.((((.(((....)))))))(((((((((.......)))).)))))))).)).....)))................ ( -24.20) >DroPse_CAF1 15606 96 + 1 GCUUCUCGGCUCUGAUCAUGACUGAGCUGAUCAUGGUGGCCCUCACUGUGCGCACUUGGCACAGGUGAGUUUCUACGAA-GAAUACGAGCUAU-GAGC ((((...(((((((((((.(......)))))))..((((..((((((((((.......))))).)))))...))))...-......)))))..-)))) ( -31.80) >DroSim_CAF1 13519 97 + 1 GUUUCUCGGCAUUAAUCAUGACUGAGCUCAUCAUGGUGGCACUCACCGUGCGUACUUGGCAUAGGUGAGUUUUGUAAAC-GCUUUUAAUCUUUAUUGU (((((...((....(((((((.((....))))))))).))(((((((((((.......)))).)))))))...).))))-.................. ( -25.10) >DroEre_CAF1 14733 98 + 1 GUUUCUCGGCAUUAAUCAUGACGGAGCUCAUCAUGGUGGCUCUCACCGUUCGUACUUGGCAUAGGUGAGUUUUGUCAACUUUUUUCAACUUUUCGUGU ..................((((((((((((((((((((.....))))))..((.....))...))))))))))))))..................... ( -25.80) >DroYak_CAF1 13403 97 + 1 GUUUCUCAGCAUUAAUCAUGACGGAGCUCAUAAUGGUGGCUCUCACCGUGCGUACUUGGCAUAGGUGAGUUUUGUCAACUUU-UUAAACCUUUUGUGU ..................(((((((((((((...((((.....))))((((.......))))..))))))))))))).....-............... ( -25.60) >DroPer_CAF1 15502 96 + 1 GCUUCUCGGCUCUGAUCAUGACUGAGCUGAUCAUGGUGGCCCUCACUGUGCGCACUUGGCACAGGUGAGUUCCUACGAA-AAAUACGAGCUAU-GAGC ((...(((((((...........)))))))(((((((((..((((((((((.......))))).)))))..))..((..-.....)).)))))-)))) ( -33.60) >consensus GUUUCUCGGCAUUAAUCAUGACUGAGCUCAUCAUGGUGGCUCUCACCGUGCGUACUUGGCAUAGGUGAGUUUUGUCAAC_GAAUUCAACCUUU_GUGU .......(((....(((((((.........))))))).)))((((((((((.......)))).))))))............................. (-19.10 = -18.88 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:29 2006