Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,295,570 – 13,295,672 |
Length | 102 |
Max. P | 0.578016 |
Location | 13,295,570 – 13,295,672 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 76.47 |
Mean single sequence MFE | -28.86 |
Consensus MFE | -14.87 |
Energy contribution | -16.77 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.27 |
Mean z-score | -1.74 |
Structure conservation index | 0.52 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578016 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13295570 102 + 22407834 ACGAAUUGCGG-------CAAUUGUUUGUUAUGGCCACUGCAAUUGUUGACGAUUGCAUUUCAAUUCAGUGGGUAGACAGGAUGAGAUAC----CUCAGCUGAAUCGCAGUUC ..(((((((((-------((((((((.......((....)).......)))))))))......((((((((((((............)))----))..))))))))))))))) ( -33.04) >DroSec_CAF1 8423 102 + 1 ACGAAUUGCGG-------CAAUUGUUUGUUAUGGCCGCUGUAAUUGUUGACGAUUGCAUUUCAAUUCAGUGGGUAGACAGGAUGAGAUAC----CUCAGCUGAAUCGCAGUUC ..(((((((((-------((((((((.(((((((...)))))))....)))))))))......((((((((((((............)))----))..))))))))))))))) ( -34.00) >DroSim_CAF1 8431 102 + 1 ACGAAUUGCGG-------CAAUUUUUUGUUAUGGCCGCUGCAAUUGUUGACGAUUGCAUUUCAAUUCAGUGGGUAGACAGGAUGAGAUAC----CUCAGCUGAAUCGCAGUUC ..(((((((((-------.....(((((((.((.((((((.(((((.((.......))...))))))))))).)))))))))((((....----))))......))))))))) ( -31.40) >DroEre_CAF1 9638 102 + 1 UCGAAUUGCGG-------CAAUUGUUUGUUACGGCCGCUGCAAUUGUUAACGAUUGCAUUUCUAUUCACUGAGAAUUCAGGAUGAGAGAC----GUCAGCUGAAUCGCAAUUC ..(((((((((-------(((....))))..((((.((((((((((....))))))))(((((..((.(((......)))))..))))).----))..))))...)))))))) ( -32.10) >DroYak_CAF1 8321 102 + 1 ACGAAUUGCGG-------CAAUUGUUUGUUAUGGCCACUGCAAUUGUUGACGAUUGCAUUUCAAUUCAGUGAGUAUACAGGAUGAAAGAC----CUCAGCUGAAUCGGUUUUC ..((((((.((-------(...((.....))..)))..((((((((....))))))))...))))))..........(((..(((.....----.))).)))........... ( -21.90) >DroPer_CAF1 10086 96 + 1 AUGCAGUGCUGUGCAGUGUACUUAUUUUUA-------------AUGUCAACGAAUGCCAUUUUAUUCAAAUCG-AAACUGAAUGAG-UACGCGAUUGAGUUGAAUCACA--UU .((((......))))((((((((((((...-------------........(((((......)))))......-.....)))))))-)))))((((......))))...--.. ( -20.75) >consensus ACGAAUUGCGG_______CAAUUGUUUGUUAUGGCCGCUGCAAUUGUUGACGAUUGCAUUUCAAUUCAGUGGGUAGACAGGAUGAGAUAC____CUCAGCUGAAUCGCAGUUC ..((((((((............................((((((((....)))))))).....((((((((((.....................)))).)))))))))))))) (-14.87 = -16.77 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:28 2006