Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,286,977 – 13,287,069 |
Length | 92 |
Max. P | 0.891187 |
Location | 13,286,977 – 13,287,069 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 81.16 |
Mean single sequence MFE | -33.92 |
Consensus MFE | -21.65 |
Energy contribution | -22.98 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.26 |
Mean z-score | -2.56 |
Structure conservation index | 0.64 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887178 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13286977 92 + 22407834 AGCCACCCAGCAACUUCGACUGCGGAACCUUAACAGAAUUCAGGGAUUCAAUAUUGAGUCCUGGCCGCAUGAGAAGUCGCUGGAGCUAGAUG (((...(((((.(((((...(((((..((......(....).((((((((....)))))))))))))))...))))).))))).)))..... ( -35.00) >DroSec_CAF1 41 92 + 1 AGCCACCCAGCAACUACGACUGCGGAACCUCAACAGAAUUCAGGGAUUCAAUAUUGAGUCCUGGCCGCAUGAGAAGUCGCUGGAGCUGGAGG ..(((((((((.(((.(...(((((..((((....)).....((((((((....)))))))))))))))...).))).))))).).)))... ( -32.50) >DroSim_CAF1 39 92 + 1 AGCCACCCAGCAACUACGACUGCGGAACCUCAACAGAAUUCAGGGAUUCAAUAUUGAGUCCUGGCCGCAUGAGAAGUCGCUGGAGCUGGAGG ..(((((((((.(((.(...(((((..((((....)).....((((((((....)))))))))))))))...).))).))))).).)))... ( -32.50) >DroEre_CAF1 40 92 + 1 GGCCACUCAGCAACUUCGACUGCGGAACCUCACCCGGAUUCAGGGAUUCAAUAUUGAGUCCGGGCCGCAAGAAAAGUCGCUCCUGGUGGUCG (((((((.(((.((((....(((((.......(((((((((((..........))))))))))))))))....)))).)))...))))))). ( -40.01) >DroYak_CAF1 39 92 + 1 GGCCACACAGCAACUUCGACUGCGGAACCUCAACCGAAUUCAGGGAUUCAAUAUUGAGUUUGGACCGCAUGAGAAGUCGCUGGAACUGGCGG .((((..((((.(((((...(((((........((((((((((..........)))))))))).)))))...))))).))))....)))).. ( -34.60) >DroAna_CAF1 40 86 + 1 GGCCACCCAACAGCUCCGCCUGCGAAACCUGGCGCGAAUUCAGGGAUUUAACAUUGUGUCCAGGUUGCAGGAAGAU------GAGCAGUUAG ((....))(((.((((..((((((..(((((((((((................))))).)))))))))))).....------)))).))).. ( -28.89) >consensus AGCCACCCAGCAACUUCGACUGCGGAACCUCAACAGAAUUCAGGGAUUCAAUAUUGAGUCCUGGCCGCAUGAGAAGUCGCUGGAGCUGGAGG ......(((((.(((((...(((((..........(....)..(((((((....)))))))...)))))...))))).)))))......... (-21.65 = -22.98 + 1.34)
Location | 13,286,977 – 13,287,069 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 81.16 |
Mean single sequence MFE | -34.34 |
Consensus MFE | -21.55 |
Energy contribution | -22.92 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.30 |
Mean z-score | -2.63 |
Structure conservation index | 0.63 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.891187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13286977 92 - 22407834 CAUCUAGCUCCAGCGACUUCUCAUGCGGCCAGGACUCAAUAUUGAAUCCCUGAAUUCUGUUAAGGUUCCGCAGUCGAAGUUGCUGGGUGGCU .....(((((((((((((((...(((((.((((..(((....)))...))))...(((....)))..)))))...)))))))))))..)))) ( -35.50) >DroSec_CAF1 41 92 - 1 CCUCCAGCUCCAGCGACUUCUCAUGCGGCCAGGACUCAAUAUUGAAUCCCUGAAUUCUGUUGAGGUUCCGCAGUCGUAGUUGCUGGGUGGCU .....(((((((((((((.....(((((......(((((((..((((......)))))))))))...))))).....)))))))))..)))) ( -34.10) >DroSim_CAF1 39 92 - 1 CCUCCAGCUCCAGCGACUUCUCAUGCGGCCAGGACUCAAUAUUGAAUCCCUGAAUUCUGUUGAGGUUCCGCAGUCGUAGUUGCUGGGUGGCU .....(((((((((((((.....(((((......(((((((..((((......)))))))))))...))))).....)))))))))..)))) ( -34.10) >DroEre_CAF1 40 92 - 1 CGACCACCAGGAGCGACUUUUCUUGCGGCCCGGACUCAAUAUUGAAUCCCUGAAUCCGGGUGAGGUUCCGCAGUCGAAGUUGCUGAGUGGCC ...((((....(((((((((..((((((((((((.(((............))).)))))).......))))))..)))))))))..)))).. ( -35.51) >DroYak_CAF1 39 92 - 1 CCGCCAGUUCCAGCGACUUCUCAUGCGGUCCAAACUCAAUAUUGAAUCCCUGAAUUCGGUUGAGGUUCCGCAGUCGAAGUUGCUGUGUGGCC ..((((....((((((((((...(((((......((((((...((((......)))).))))))...)))))...))))))))))..)))). ( -37.40) >DroAna_CAF1 40 86 - 1 CUAACUGCUC------AUCUUCCUGCAACCUGGACACAAUGUUAAAUCCCUGAAUUCGCGCCAGGUUUCGCAGGCGGAGCUGUUGGGUGGCC (((((.((((------.....((((((((((((.(.(....(((......)))....).))))))))..)))))..)))).)))))...... ( -29.40) >consensus CCUCCAGCUCCAGCGACUUCUCAUGCGGCCAGGACUCAAUAUUGAAUCCCUGAAUUCGGUUGAGGUUCCGCAGUCGAAGUUGCUGGGUGGCC ......((((((((((((((...(((((.(((((.(((............))).)))))........)))))...)))))))))))..))). (-21.55 = -22.92 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:19 2006