Locus 4640

Sequence ID 2L_DroMel_CAF1
Location 13,285,549 – 13,285,654
Length 105
Max. P 0.549020
window7327

overview

Window 7

Location 13,285,549 – 13,285,654
Length 105
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.76
Mean single sequence MFE -26.62
Consensus MFE -19.14
Energy contribution -19.39
Covariance contribution 0.25
Combinations/Pair 1.25
Mean z-score -1.33
Structure conservation index 0.72
SVM decision value 0.03
SVM RNA-class probability 0.549020
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13285549 105 + 22407834
UCCGGAUGCUGUUCGAUAAAAUCGUAGAAAAUGUCAGCCACCUUUAGCAAAGGCGAUUGUUGUCGCAUCUUCUCAAACUCAAAAUCGGCAUCUAAUAG---AAGACAG-
...((((((((..((((...)))).((((.(((((((((.((((.....)))).)...))))..)))).))))............)))))))).....---.......- ( -20.90)
>DroPse_CAF1 22218 102 + 1
UCCGGAUGCUGUUCUAUAAAGUCAUAGAAGAUGUCUGCCACCUUCAGCAAGGGCGAUUGCUGGCGCAUUUUCUCAAAUUCAAAGUCGGCAUCUAUCAA---GA---AU-
...((((((((..((..........(((((((((..((((((((....))))((....))))))))))))))).........)).)))))))).....---..---..- ( -27.61)
>DroGri_CAF1 21534 104 + 1
UCCGGAUGCUGCUCAAUGAAGUCGUAAAAAAUGUCGGCCACCUUCAGCAGCGGCGACUGUUGACGCAUUUUCUCAAACUCAAAAUCCGCAUCUGUUAA---AU-AUAU-
..(((((((.(((((((..((((((......((..((...))..))......))))))))))).))(((((.........)))))..)))))))....---..-....- ( -23.10)
>DroMoj_CAF1 25774 108 + 1
UCCGGAUGCUGCUCGAUGAAGUCGUAGAAAAUGUCCGCGACCUUCAGCAGCGGCGACUGUUGCCGCAUUUGCUCAAACUCAAAGUCAGCAUCUGUUACAGAAU-GUAAA
..(((((((((((...((((((((..((.....))..))).)))))((((((((((...)))))))...)))..........)).)))))))))((((.....-)))). ( -38.20)
>DroAna_CAF1 20776 100 + 1
UCCGGAUGCUGCUCUAUAAAGUCAUAAAAGAUGUCUGCCACUUUCAGCAACGGCGACUGCUGGCGCAUUUUCUCAAAUUCAAAGUCGGCAUCUAAAAA---AU------
...((((((((..((............(((((((..(((((..((.((....))))..).)))))))))))...........)).)))))))).....---..------ ( -22.30)
>DroPer_CAF1 22953 102 + 1
UCCGGAUGCUGUUCUAUAAAGUCAUAGAAGAUGUCUGCCACCUUCAGCAAGGGCGAUUGCUGGCGCAUUUUCUCAAAUUCAAAGUCGGCAUCUAUCAA---GA---AU-
...((((((((..((..........(((((((((..((((((((....))))((....))))))))))))))).........)).)))))))).....---..---..- ( -27.61)
>consensus
UCCGGAUGCUGCUCUAUAAAGUCAUAGAAAAUGUCUGCCACCUUCAGCAACGGCGACUGCUGGCGCAUUUUCUCAAACUCAAAGUCGGCAUCUAUUAA___AA___AU_
...((((((((..............(((((((((.........(((((((......))))))).)))))))))............))))))))................ (-19.14 = -19.39 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:17 2006